CHF347
Library CH
(Link to library)
Clone ID CHF347
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID CHF347P
(Link to Original site)
Representative DNA sequence
>CHF347 (CHF347Q) /CSM/CH/CHF3-B/CHF347Q.Seq.d/
AAACATAAAAGAAAAAGAATCGTAAAGAGGTTAACACTGCACCATTAATCAATAATATTC
GCTTATTATTAAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAAC
TATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACATA
TGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAACC
ACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGAA
ACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATTT
AATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAAC
ATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAAC
TTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTCA
TCATATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTGTTATCGA
AGGTAGTCCAAATAAGATTCCAATGATTTATGGTTXXXXXXXXXXGTCCAAGAATTTTAC
CACCAGATTTNGTNTACAGTTGTGCTGCAGTTTTAATGGCTTATNTCCCAGGTAGTGAAG
GTGGTAAACCAATCGCCAACATTTTCATGGGTAATGTAAATCCATCTGGTCGTNTTCCTT
TAACTTATCCAGGTACTACTGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAA
ATGGTGTCACCACTCCACTNTTCCAATTTGGTGATGGTNTTTNTTATACCACTTTTAACT
ATACCAATNTCGCCTGTAGCAATTGTAAACCAATCTNTGGTCAATNTGGTAACTACACTG
GTGTTTTAGGTCAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAG
GTAAAGACTCTGTTNTCTTANATCTCTCTGATCTTTGGGCTCAAGTTACTCCANAAGTTA
AAATGTTAANAGGTTTCCAAAAAGTTGATNTTATGCCAGCTAAATNTCAACAAATCTCTT
TTACCCTCAATGCCTATGAATTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAAT
CTGGTCAATTCATCATTATGGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAA
AAAAATTAAAAAAATTAAATTAAATTAAATAGTTAAAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence
nikekes*rg*hctinq*YSLIIKYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTY
GSSIRVSIVGGEEAEVIEKPRTFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNL
MSKMSITEKIGQMTQLDITTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIH
HINSSVWLDMINTIQTIVIEGSPNKIPMIYG---

---PRILPPDXVYSCAAVLMAYXPGSEGGKPIANIFMGNVNPSGRXPLTYPGTTGDIGVP
YYHKYSENGVTTPLFQFGDGXXYTTFNYTNXACSNCKPIXGQXGNYTGVLGQSYTFTVTV
TNNGNVQGKDSVXLXLSDLWAQVTPXVKMLXGFQKVDXMPAKXQQISFTLNAYEFSFIGV
DNKITLESGQFIIMVGNQQLGLYLQ*kkklkkln*ik*lki


Translated Amino Acid sequence (All Frames)
Frame A:
khkrkrivkrltlhh*siifayy*ifn*iqfyiyi*kdeny*kfiftvivdsefinkfni
wkfn*skhcwr*rs*sh*kttyfwk*krtqirv*snlsketiksrky*fhvcqryfc**f
nvknvnh*knwsndsigyyninitkynyn**nnisilc*nllywiifkftsirwfsr*ys
sy***clvryd*yysnhcyrr*sk*dsndlw---

---vqefyhqixxtvvlqf*wlxsqvvkvvnqsptfswvm*ihlvvfl*liqvllvisvf
hittntvkmvsplhxsnlvmvfxiplltipxspvaivnqsxvnxvttlvf*vnpilslsl
sqtmvtfkvktlxsxislifglkllxklkc*xvskklxlcqlnxnksllpsmpmnspllv
siikll*nlvnsslwlvinn*vyiynkkkn*kn*iklns*k*

Frame B:
nikekes*rg*hctinq*YSLIIKYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTY
GSSIRVSIVGGEEAEVIEKPRTFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNL
MSKMSITEKIGQMTQLDITTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIH
HINSSVWLDMINTIQTIVIEGSPNKIPMIYG---

---sknfttrfxxqlccsfnglxpr**rw*tnrqhfhg*cksiwsxsfnlsryyw*yrcs
ilpqiq*kwchhstxpiw*wxxlyhf*lyqxrl*ql*tnlwsxw*lhwcfrsilyfhchc
hkqw*rsr*rlcxlxsl*slgssysxs*nvxrfpks*xyas*xstnlfypqcl*illywc
r**nyfriwsihhygw*stirfiftikkkikkikln*ivknk

Frame C:
t*kkknrkevntaplinnirlllni*lnsilyiyikr*kllkvyfychc***iy**vqhm
evqle*allevkklkslknhvlleikensn*sivkfiqrnn*ikkilisclpeilllii*
cqkcqslkklvk*lnwilqh*hhqiqlqlmkqh*himlkliildhi*ihqyqvv*qvifi
ilivvfg*i*lilfkpllskvvqirfq*fmv---

---PRILPPDXVYSCAAVLMAYXPGSEGGKPIANIFMGNVNPSGRXPLTYPGTTGDIGVP
YYHKYSENGVTTPLFQFGDGXXYTTFNYTNXACSNCKPIXGQXGNYTGVLGQSYTFTVTV
TNNGNVQGKDSVXLXLSDLWAQVTPXVKMLXGFQKVDXMPAKXQQISFTLNAYEFSFIGV
DNKITLESGQFIIMVGNQQLGLYLQ*kkklkkln*ik*lki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF347 (CHF347Q) /CSM/CH/CHF3-B/CHF347Q.Seq.d/ 2113 0.0
VHJ687 (VHJ687Q) /CSM/VH/VHJ6-D/VHJ687Q.Seq.d/ 1094 0.0
VHD430 (VHD430Q) /CSM/VH/VHD4-B/VHD430Q.Seq.d/ 1094 0.0
VHJ645 (VHJ645Q) /CSM/VH/VHJ6-B/VHJ645Q.Seq.d/ 1084 0.0
VHB737 (VHB737Q) /CSM/VH/VHB7-B/VHB737Q.Seq.d/ 1082 0.0
VHH848 (VHH848Q) /CSM/VH/VHH8-B/VHH848Q.Seq.d/ 1076 0.0
VHA232 (VHA232Q) /CSM/VH/VHA2-B/VHA232Q.Seq.d/ 1076 0.0
VHO816 (VHO816Q) /CSM/VH/VHO8-A/VHO816Q.Seq.d/ 1072 0.0
CHR280 (CHR280Q) /CSM/CH/CHR2-D/CHR280Q.Seq.d/ 1072 0.0
CFJ426 (CFJ426Q) /CSM/CF/CFJ4-B/CFJ426Q.Seq.d/ 1072 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L21014|L21014.1 Dictyostelium discoideum beta-glucosidase mRNA, complete cds. 1047 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 6e-06 21
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome. 38 5e-05 16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 7e-05 20
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces. 32 9e-05 15
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 44 1e-04 15
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 34 2e-04 13
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 9e-04 18
BX119989|BX119989.12 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 44 0.001 7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 0.001 24
dna update 2004. 9.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma... 344 4e-93
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 114 9e-24
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 103 1e-20
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 102 2e-20
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 97 9e-19
CP000685_3497(CP000685|pid:none) Flavobacterium johnsoniae UW101... 96 3e-18
CP000388_3699(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 96 3e-18
CP001146_680(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 94 1e-17
CP001251_792(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 94 1e-17
AF015915_1(AF015915|pid:none) Chryseobacterium meningosepticum b... 88 6e-16
protein update 2009. 3.31
PSORT

psg: 0.74 gvh: 0.73 alm: 0.26 top: 0.07 tms: 0.07 mit: 0.40 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.91 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: Golgi
16.0 %: endoplasmic reticulum
16.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal
4.0 %: plasma membrane

>> prediction for CHF347 is cyt

5' end seq. ID CHF347F
5' end seq.
>CHF347F.Seq
AAACATAAAAGAAAAAGAATCGTAAAGAGGTTAACACTGCACCATTAATCAATAATATTC
GCTTATTATTAAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAAC
TATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACATA
TGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAACC
ACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGAA
ACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATTT
AATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAAC
ATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAAC
TTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTCA
TCATATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTGTTATCGA
AGGTAGTCCAAATAAGATTCCAATGATTTATGGTTNNNNNNNNNN
Length of 5' end seq. 645
3' end seq. ID CHF347Z
3' end seq.
>CHF347Z.Seq
NNNNNNNNNNGTCCAAGAATTTTACCACCAGATTTNGTNTACAGTTGTGCTGCAGTTTTA
ATGGCTTATNTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTTTCATGGGTAAT
GTAAATCCATCTGGTCGTNTTCCTTTAACTTATCCAGGTACTACTGGTGATATCGGTGTT
CCATATTACCACAAATACAGTGAAAATGGTGTCACCACTCCACTNTTCCAATTTGGTGAT
GGTNTTTNTTATACCACTTTTAACTATACCAATNTCGCCTGTAGCAATTGTAAACCAATC
TNTGGTCAATNTGGTAACTACACTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCACT
GTCACAAACAATGGTAACGTTCAAGGTAAAGACTCTGTTNTCTTANATCTCTCTGATCTT
TGGGCTCAAGTTACTCCANAAGTTAAAATGTTAANAGGTTTCCAAAAAGTTGATNTTATG
CCAGCTAAATNTCAACAAATCTCTTTTACCCTCAATGCCTATGAATTCTCCTTTATTGGT
GTCGATAATAAAATTACTTTAGAATCTGGTCAATTCATCATTATGGTTGGTAATCAACAA
TTAGGTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAATTAAATTAAATAGTTA
AAAATAAA
Length of 3' end seq. 668
Connected seq. ID CHF347P
Connected seq.
>CHF347P.Seq
AAACATAAAAGAAAAAGAATCGTAAAGAGGTTAACACTGCACCATTAATCAATAATATTC
GCTTATTATTAAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGATGAAAAC
TATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTTCAACATA
TGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTGAAAAACC
ACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATCCAAAGAA
ACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTGATAATTT
AATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATATTACAAC
ATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATGCTAAAAC
TTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTGATATTCA
TCATATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTGTTATCGA
AGGTAGTCCAAATAAGATTCCAATGATTTATGGTT----------GTCCAAGAATTTTAC
CACCAGATTTNGTNTACAGTTGTGCTGCAGTTTTAATGGCTTATNTCCCAGGTAGTGAAG
GTGGTAAACCAATCGCCAACATTTTCATGGGTAATGTAAATCCATCTGGTCGTNTTCCTT
TAACTTATCCAGGTACTACTGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAA
ATGGTGTCACCACTCCACTNTTCCAATTTGGTGATGGTNTTTNTTATACCACTTTTAACT
ATACCAATNTCGCCTGTAGCAATTGTAAACCAATCTNTGGTCAATNTGGTAACTACACTG
GTGTTTTAGGTCAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAG
GTAAAGACTCTGTTNTCTTANATCTCTCTGATCTTTGGGCTCAAGTTACTCCANAAGTTA
AAATGTTAANAGGTTTCCAAAAAGTTGATNTTATGCCAGCTAAATNTCAACAAATCTCTT
TTACCCTCAATGCCTATGAATTCTCCTTTATTGGTGTCGATAATAAAATTACTTTAGAAT
CTGGTCAATTCATCATTATGGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAA
AAAAATTAAAAAAATTAAATTAAATTAAATAGTTAAAAATAAA
Length of connected seq. 1293
Full length Seq ID -
Full length Seq. -
Length of full length seq. -