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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF279
Library CH
(Link to library)
Clone ID CHF279
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHF279P
(Link to Original site)
Representative DNA sequence 
>CHF279 (CHF279Q) /CSM/CH/CHF2-D/CHF279Q.Seq.d/
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGC
TGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGAXXXXXXXXXXTAAT
CATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGAT
ATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAGGGTTCAATTCGTTGGTAT
AATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGT
CGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTAT
GATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGT
ATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAA
CAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTT
GATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCC
ATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCA
ACTGTGATAATGTTTATGTCACTTCTTTTACTTCTTC
sequence update 2002.10.25
Translated Amino Acid sequence 
ISSQVYDQRILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSAD
GTFIYDGLTQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLLVANT
FAYNIPLIKQVGVSSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVA
GLLFTDINGNGIFDG---

---NHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYIT
SSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFL
IYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSD
AFLSTVIMFMSLLLLL
Translated Amino Acid sequence (All Frames) 
Frame A:
yfitsi*styfgikrkmlfrfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*
wyiyi*winstynl*iyiyqskrlll*nl*kdiglstrctmyssngfs**fgsrsfscky
lcl*hsid*tswcfirliytys*n*c*fglc*ansttnsttysttysttntstiyw*crr
wfiiyryqw*wnf*w---

---*s*nrss*lyqcfwcn*rws*yycynwfrll*si*gfnslv*cnlw*ttkrllfiyn
lfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhsil
nlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**
cflincdnvyvtsfts

Frame B:
ISSQVYDQRILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSAD
GTFIYDGLTQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSADNLAADLLVANT
FAYNIPLIKQVGVSSGSSILTVRISVDLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVA
GLLFTDINGNGIFDG---

---NHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYIT
SSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFL
IYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSD
AFLSTVIMFMSLLLLL

Frame C:
fhhkyminvfwh*kenvi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllm
vhlymmd*lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqip
lpitfh*lnklvfhqahlylqlelvliwvmlsklnhqlnhllnhllnhqhlhhllvvpsl
vyylpismvmeflm---

---iikqvfmtipmllvqlkvvvilllqlvsitmkhlrvqfvgimqplvnn*kvtlyi*p
lqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqys*
smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliqliqiqivm
lsyql**clchffyff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF279 (CHF279Q) /CSM/CH/CHF2-D/CHF279Q.Seq.d/                       1263   0.0
SHK374 (SHK374Q) /CSM/SH/SHK3-D/SHK374Q.Seq.d/                       1144   0.0
SHG818 (SHG818Q) /CSM/SH/SHG8-A/SHG818Q.Seq.d/                       1144   0.0
SHG134 (SHG134Q) /CSM/SH/SHG1-B/SHG134Q.Seq.d/                       1144   0.0
SHD532 (SHD532Q) /CSM/SH/SHD5-B/SHD532Q.Seq.d/                       1144   0.0
SHD448 (SHD448Q) /CSM/SH/SHD4-B/SHD448Q.Seq.d/                       1144   0.0
SHC767 (SHC767Q) /CSM/SH/SHC7-C/SHC767Q.Seq.d/                       1144   0.0
SHC674 (SHC674Q) /CSM/SH/SHC6-D/SHC674Q.Seq.d/                       1144   0.0
CHS379 (CHS379Q) /CSM/CH/CHS3-D/CHS379Q.Seq.d/                       1144   0.0
CHS346 (CHS346Q) /CSM/CH/CHS3-B/CHS346Q.Seq.d/                       1144   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP003359|AP003359.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 2/9.    38   0.10   13
BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.33   1
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    34   0.41   9
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   0.56   24
AC150654|AC150654.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, *** SEQUENCING IN PROGRESS ***, 11 ordered pieces.    36   0.67   2
AC114012|AC114012.4 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    36   0.68   2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   0.68   2
AC013504|AC013504.3 Homo sapiens clone RP11-115G14, WORKING DRAFT SEQUENCE, 13 unordered pieces.    42   0.75   7
CR735144|CR735144.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.86   7
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   1.0    21
dna update 2004. 9.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    61   6e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   3e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   3e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   2e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   2e-05
protein update 2009. 3.31
PSORT 

 psg: 0.71  gvh: 0.28  alm: 0.26  top: 0.57  tms: 0.07  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHF279 is cyt
5' end seq. ID CHF279F
5' end seq. 
>CHF279F.Seq
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGC
TGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGANNNNNNNNNN
Length of 5' end seq. 596
3' end seq. ID CHF279Z
3' end seq. 
>CHF279Z.Seq
NNNNNNNNNNTAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTA
AAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAGGGTT
CAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAA
CCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATA
TTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATA
TAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCT
TAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATT
TCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCC
AAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTG
ATGCTTTCTTATCAACTGTGATAATGTTTATGTCACTTCTTTTACTTCTTC
Length of 3' end seq. 591
Connected seq. ID CHF279P
Connected seq. 
>CHF279P.Seq
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACC
ACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGC
TGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGGA----------TAAT
CATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGAT
ATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAGGGTTCAATTCGTTGGTAT
AATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGT
CGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTAT
GATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGT
ATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAA
CAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTT
GATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCC
ATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCA
ACTGTGATAATGTTTATGTCACTTCTTTTACTTCTTC
Length of connected seq. 1167
Full length Seq ID -
Full length Seq. -
Length of full length seq. -