>CHF264 (CHF264Q) /CSM/CH/CHF2-C/CHF264Q.Seq.d/
TTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGT
AGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCA
AAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACT
CCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGAT
GCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGG
GCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATT
CCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAATTGG
TTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGAT
GTAACAATTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACTCTTAAAGGT
AATGCTTCAGTTTCAAGTTGTTCAGTTGATGGCGCTTCACAAAACACCAACACAATCAAA
TATAAATGGTCAATTGTTCCAGAGATTCAATTGGCAAGTTCAAAAGXXXXXXXXXXTATC
CAATTCATTGGCAGATGGTATTCTTCCAAAGAACTGCAATTGGTGAAGAACCATTTACAG
TTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTA
AGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAA
AACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAA
AACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATC
ATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCT
CTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCAC
CACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAA
CAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTA
CAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGAC
CAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGA
GAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAG
AAAAAGAAGACAAAAAGAAACAAGCAAAAGAAAAGAAAGAAG

LGSSPRCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDST
PVVDIKAPNVLDSCSPLVLDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITI
PNDLLSSGQTYTFTLKITNWLKKSDSASVSVTKKEGEVLDVTIQGPSIHRMGAIDLTLKG
NASVSSCSVDGASQNTNTIKYKWSIVPEIQLASSK---

---YPIHWQMVFFQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQS
LDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLEL
FNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCK
CNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKSKKTKE
QINKEKEDKKKQAKEKKE

Frame A:
LGSSPRCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDST
PVVDIKAPNVLDSCSPLVLDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITI
PNDLLSSGQTYTFTLKITNWLKKSDSASVSVTKKEGEVLDVTIQGPSIHRMGAIDLTLKG
NASVSSCSVDGASQNTNTIKYKWSIVPEIQLASSK---

---YPIHWQMVFFQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQS
LDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLEL
FNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCK
CNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKSKKTKE
QINKEKEDKKKQAKEKKE

Frame B:
wvvlqdvnillqtf*wlhwvvvkvyqlannwnflkveslqkmvvriiikl*hwnhhkiql
qw*ilklqmf*ihvvhwy*mlviqkvvmekh*pmigrlvgqiqtln*iiywikimqp*qf
qmifchlvklillhlksqig*rnliaqvfq*qrkrvkf*m*qfkvqvfivwvqli*llkv
mlqfqvvqlmalhktptqsningqlfqrfnwqvqk---

---iqfigrwysskelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrmmkvnl
lmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqklfhlnf
smvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*mvifnvn
vtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkrtnqrkpkn
kstkkkktkrnkqkkrkk

Frame C:
g*fskm*iycfkhsngyig*w*kciswptigifsrwnhfkrw**e*lsnynigtttrfns
sgry*sskcfrfm*sigirc*sfkrw*wksinl*lvg*wgrykhsik*sigsk*cnhnns
k*sfviwsnlyfyt*nhklvkei**rkcfsnkerg*sfrcnnsrskyssygcn*sns*r*
cfsfklfs*wrftkhqhnqi*mvncsrdsigkfk---

---snsladgilpkncnw*rtiysck**rfldyni*nstygik*ewsidwfqkg**rsis
*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkncft*tf
qwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw*ysm*m
*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkekekqkqkeqikenqrt
nqqrkrrqketskrker

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF264 (CHF264Q) /CSM/CH/CHF2-C/CHF264Q.Seq.d/                       2547   0.0
SHL562 (SHL562Q) /CSM/SH/SHL5-C/SHL562Q.Seq.d/                       1306   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1291   0.0
SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/                       1291   0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/                       1291   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1291   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1291   0.0
SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/                       1291   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1291   0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/                       1291   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX119904|BX119904.4 Human DNA sequence from clone RP11-232D9 on chromosome X.    36   0.018  13
AP004170|AP004170.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 1/5.    32   0.062  15
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.094  25
AC006250|AC006250.4 Arabidopsis thaliana chromosome 2 clone T6A13 map mi398, complete sequence.    42   0.17   5
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.40   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.40   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.40   1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces.    48   0.40   1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   0.46   16
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.80   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    56   3e-06
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.004
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.005
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.008

 psg: 0.94  gvh: 0.54  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.20  mip: 0.02
 nuc: 0.17  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHF264 is cyt

>CHF264F.Seq
TTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGT
AGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCA
AAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACT
CCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGAT
GCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGG
GCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATT
CCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAATTGG
TTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGAT
GTAACAATTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACTCTTAAAGGT
AATGCTTCAGTTTCAAGTTGTTCAGTTGATGGCGCTTCACAAAACACCAACACAATCAAA
TATAAATGGTCAATTGTTCCAGAGATTCAATTGGCAAGTTCAAAAGNNNNNNNNNN

>CHF264Z.Seq
NNNNNNNNNNTATCCAATTCATTGGCAGATGGTATTCTTCCAAAGAACTGCAATTGGTGA
AGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTACA
TATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATC
TCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATC
AAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAA
TATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACT
TTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATAT
GGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAA
AAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAA
ATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTG
GATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGT
TGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGA
ACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAGAAAAGAAAGAAG

>CHF264P.Seq
TTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGT
AGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCA
AAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACT
CCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGAT
GCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGG
GCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATT
CCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAATTGG
TTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGAT
GTAACAATTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACTCTTAAAGGT
AATGCTTCAGTTTCAAGTTGTTCAGTTGATGGCGCTTCACAAAACACCAACACAATCAAA
TATAAATGGTCAATTGTTCCAGAGATTCAATTGGCAAGTTCAAAAG----------TATC
CAATTCATTGGCAGATGGTATTCTTCCAAAGAACTGCAATTGGTGAAGAACCATTTACAG
TTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTA
AGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAA
AACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAA
AACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATC
ATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCT
CTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCAC
CACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAA
CAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTA
CAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGAC
CAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGA
GAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAG
AAAAAGAAGACAAAAAGAAACAAGCAAAAGAAAAGAAAGAAG