CHF245
Library CH
(Link to library)
Clone ID CHF245
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID CHF245P
(Link to Original site)
Representative DNA sequence
>CHF245 (CHF245Q) /CSM/CH/CHF2-B/CHF245Q.Seq.d/
AATGACTCAATTGGATATTACAACATTAACATCACCAAATACAATTACAATTAATGAAAC
AACATTAGCATATTATGCTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATC
AGGTGGTTTAGCAGGTGATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAA
TACTATTCAAACCATTGTTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTT
AGATTCAGTACATGGTGCAAATTATGTTCACAAAGCAACTTTATTCCCACATAATACTGG
TTTAGCCGCTACTTTCAATATTGAACATGCTACTACTGCTGCACAAATTACTTCAAAAGA
TACTGTTGCCGTTGGTATCCCTTGGGTGTTTGCACCAGTTTTAGGTATTGGTGTTCAACC
ATTATGGTCTCGTATCTATGAAACTTTTGGTGAAGATCCATACGTTGCATCAATGATGGG
TGCTGCTGCCGTTCGTGGTTTCCAAGGTGGTAACAATTCATTCGATGGTCCAATCAATGC
CCCATCTGCAGTTTGTACTGCTAAACATTATTTTXXXXXXXXXXATTACAACAATTGGTT
GACACTGGTAAACCAGTAGTTTTAATTTTGGTTGAAGCTCGTCCAAGAATTTTACCACCA
GATTTCGTCTACAGTTGTGCTGCAGTTTTAATGGCTTATNTCCCAGGTAGTGAAGGTGGT
AAACCAATCGCCAACATTTTCATGGGTAATGTAAATCCACCTGGTCGTNTTCCTTTAACT
TATCCAGGTACTACTGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAAATGGT
GTCACCACTCCACTNTTCCAATTTGGTGATGGTCTTTNTTATACCACTTTTAACTATACC
AATNTCGCCTGTAGCAATTGTAAACCAATCTNTGGTCAATNTGGTAACTACACTGGTGTT
TTAGGTCAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAAA
NACTCTGTTNTCTTANATCTCTCTGATCTTTGGGCTCAAGTTACTCCANAAGTTAAAATG
TTAANAGGTTTCCAAAAAGTTGATNTTANGCCAGCTAAATCTCAACAAATCTCTTTTACC
CTCAANGCCTATGAATTCTCCNTTATTGGTGTCGATAATAAAATTACTTTAGAATCGGGT
CAATTCATCATTANGGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAA
TTAAAAAAATTAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence
MTQLDITTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMIN
TIQTIVIEGSPNKIPMIYGLDSVHGANYVHKATLFPHNTGLAATFNIEHATTAAQITSKD
TVAVGIPWVFAPVLGIGVQPLWSRIYETFGEDPYVASMMGAAAVRGFQGGNNSFDGPINA
PSAVCTAKHYF---

---LQQLVDTGKPVVLILVEARPRILPPDFVYSCAAVLMAYXPGSEGGKPIANIFMGNVN
PPGRXPLTYPGTTGDIGVPYYHKYSENGVTTPLFQFGDGLXYTTFNYTNXACSNCKPIXG
QXGNYTGVLGQSYTFTVTVTNNGNVQGKXSVXLXLSDLWAQVTPXVKMLXGFQKVDXXPA
KSQQISFTLXAYEFSXIGVDNKITLESGQFIIXVGNQQLGLYLQ*kkklkkln


Translated Amino Acid sequence (All Frames)
Frame A:
ndsigyyninitkynyn**nnisilc*nllywiifkftsirwfsr*yssy***clvryd*
yysnhcyrr*sk*dsndlwfrfstwcklcsqsnfipt*ywfsryfqy*tcyycctnyfkr
yccrwyplgvctsfrywcstimvsyl*nfw*rsircindgcccrswfprw*qfirwsnqc
picslyc*tlf---

---ittig*hw*tssfnfg*sssknfttrfrlqlccsfnglxpr**rw*tnrqhfhg*ck
stwsxsfnlsryyw*yrcsilpqiq*kwchhstxpiw*wsxlyhf*lyqxrl*ql*tnlw
sxw*lhwcfrsilyfhchchkqw*rsr*xlcxlxsl*slgssysxs*nvxrfpks*xxas
*istnlfypqxl*ilxywcr**nyfrigsihhxgw*stirfiftikkkikkikl

Frame B:
MTQLDITTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMIN
TIQTIVIEGSPNKIPMIYGLDSVHGANYVHKATLFPHNTGLAATFNIEHATTAAQITSKD
TVAVGIPWVFAPVLGIGVQPLWSRIYETFGEDPYVASMMGAAAVRGFQGGNNSFDGPINA
PSAVCTAKHYF---

---LQQLVDTGKPVVLILVEARPRILPPDFVYSCAAVLMAYXPGSEGGKPIANIFMGNVN
PPGRXPLTYPGTTGDIGVPYYHKYSENGVTTPLFQFGDGLXYTTFNYTNXACSNCKPIXG
QXGNYTGVLGQSYTFTVTVTNNGNVQGKXSVXLXLSDLWAQVTPXVKMLXGFQKVDXXPA
KSQQISFTLXAYEFSXIGVDNKITLESGQFIIXVGNQQLGLYLQ*kkklkkln

Frame C:
*lnwilqh*hhqiqlqlmkqh*himlkliildhi*ihqyqvv*qvifiilivvfg*i*li
lfkpllskvvqirfq*fmv*iqymvqimftkqlyshiilv*pllsilnmllllhkllqki
llplvslgclhqf*vlvfnhyglvsmkllvkihtlhq*wvllpfvvskvvtihsmvqsmp
hlqfvllnii---

---ynnwltlvnq*f*fwlklvqefyhqisstvvlqf*wlxsqvvkvvnqsptfswvm*i
hlvvfl*liqvllvisvfhittntvkmvsplhxsnlvmvfxiplltipxspvaivnqsxv
nxvttlvf*vnpilslslsqtmvtfkvxtlxsxislifglkllxklkc*xvskklxlxql
nlnksllpsxpmnspllvsiikll*nrvnsslxlvinn*vyiynkkkn*kn*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF245 (CHF245Q) /CSM/CH/CHF2-B/CHF245Q.Seq.d/ 2315 0.0
VHJ687 (VHJ687Q) /CSM/VH/VHJ6-D/VHJ687Q.Seq.d/ 1178 0.0
VHJ645 (VHJ645Q) /CSM/VH/VHJ6-B/VHJ645Q.Seq.d/ 1174 0.0
VHB737 (VHB737Q) /CSM/VH/VHB7-B/VHB737Q.Seq.d/ 1170 0.0
VHA232 (VHA232Q) /CSM/VH/VHA2-B/VHA232Q.Seq.d/ 1158 0.0
VHI124 (VHI124Q) /CSM/VH/VHI1-A/VHI124Q.Seq.d/ 1138 0.0
VHQ110 (VHQ110Q) /CSM/VH/VHQ1-A/VHQ110Q.Seq.d/ 1134 0.0
VHH715 (VHH715Q) /CSM/VH/VHH7-A/VHH715Q.Seq.d/ 1132 0.0
VHJ550 (VHJ550Q) /CSM/VH/VHJ5-C/VHJ550Q.Seq.d/ 1128 0.0
VHD344 (VHD344Q) /CSM/VH/VHD3-B/VHD344Q.Seq.d/ 1128 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L21014|L21014.1 Dictyostelium discoideum beta-glucosidase mRNA, complete cds. 1138 0.0 2
AL121949|AL121949.13 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP3-407E4. 48 0.36 1
AC067915|AC067915.2 Homo sapiens clone RP11-131G15, WORKING DRAFT SEQUENCE, 21 unordered pieces. 48 0.36 1
AL596181|AL596181.10 Mouse DNA sequence from clone RP23-234K24 on chromosome 11. 48 0.36 1
AC073286|AC073286.5 Homo sapiens chromosome 3 clone RP11-298M2, *** SEQUENCING IN PROGRESS ***, 47 unordered pieces. 48 0.36 1
AC022656|AC022656.3 Homo sapiens clone RP11-28P11, WORKING DRAFT SEQUENCE, 22 unordered pieces. 48 0.36 1
AL662863|AL662863.6 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone RP23-134A20. 48 0.36 1
AC126207|AC126207.3 Rattus norvegicus clone CH230-284B4, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 1.4 1
AC111622|AC111622.3 Rattus norvegicus clone CH230-125G14, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 46 1.4 1
AL929307|AL929307.8 Zebrafish DNA sequence from clone CH211-85A24 in linkage group 20. 40 4.5 5
dna update 2004. 9.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma... 393 e-108
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 134 7e-30
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 132 2e-29
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 132 3e-29
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 128 4e-28
CP001146_258(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 119 2e-25
CP000685_3497(CP000685|pid:none) Flavobacterium johnsoniae UW101... 110 1e-22
CP000472_1566(CP000472|pid:none) Shewanella piezotolerans WP3, c... 110 1e-22
CP000934_1112(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 109 2e-22
CP000383_2243(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 109 2e-22
protein update 2009. 3.31
PSORT

psg: 0.75 gvh: 0.42 alm: 0.28 top: 0.43 tms: 0.07 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CHF245 is cyt

5' end seq. ID CHF245F
5' end seq.
>CHF245F.Seq
AATGACTCAATTGGATATTACAACATTAACATCACCAAATACAATTACAATTAATGAAAC
AACATTAGCATATTATGCTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATC
AGGTGGTTTAGCAGGTGATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAA
TACTATTCAAACCATTGTTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTT
AGATTCAGTACATGGTGCAAATTATGTTCACAAAGCAACTTTATTCCCACATAATACTGG
TTTAGCCGCTACTTTCAATATTGAACATGCTACTACTGCTGCACAAATTACTTCAAAAGA
TACTGTTGCCGTTGGTATCCCTTGGGTGTTTGCACCAGTTTTAGGTATTGGTGTTCAACC
ATTATGGTCTCGTATCTATGAAACTTTTGGTGAAGATCCATACGTTGCATCAATGATGGG
TGCTGCTGCCGTTCGTGGTTTCCAAGGTGGTAACAATTCATTCGATGGTCCAATCAATGC
CCCATCTGCAGTTTGTACTGCTAAACATTATTTTNNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID CHF245Z
3' end seq.
>CHF245Z.Seq
NNNNNNNNNNATTACAACAATTGGTTGACACTGGTAAACCAGTAGTTTTAATTTTGGTTG
AAGCTCGTCCAAGAATTTTACCACCAGATTTCGTCTACAGTTGTGCTGCAGTTTTAATGG
CTTATNTCCCAGGTAGTGAAGGTGGTAAACCAATCGCCAACATTTTCATGGGTAATGTAA
ATCCACCTGGTCGTNTTCCTTTAACTTATCCAGGTACTACTGGTGATATCGGTGTTCCAT
ATTACCACAAATACAGTGAAAATGGTGTCACCACTCCACTNTTCCAATTTGGTGATGGTC
TTTNTTATACCACTTTTAACTATACCAATNTCGCCTGTAGCAATTGTAAACCAATCTNTG
GTCAATNTGGTAACTACACTGGTGTTTTAGGTCAATCCTATACTTTCACTGTCACTGTCA
CAAACAATGGTAACGTTCAAGGTAAANACTCTGTTNTCTTANATCTCTCTGATCTTTGGG
CTCAAGTTACTCCANAAGTTAAAATGTTAANAGGTTTCCAAAAAGTTGATNTTANGCCAG
CTAAATCTCAACAAATCTCTTTTACCCTCAANGCCTATGAATTCTCCNTTATTGGTGTCG
ATAATAAAATTACTTTAGAATCGGGTCAATTCATCATTANGGTTGGTAATCAACAATTAG
GTTTATATTTACAATAAAAAAAAAAATTAAAAAAATTAAATTA
Length of 3' end seq. 703
Connected seq. ID CHF245P
Connected seq.
>CHF245P.Seq
AATGACTCAATTGGATATTACAACATTAACATCACCAAATACAATTACAATTAATGAAAC
AACATTAGCATATTATGCTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATC
AGGTGGTTTAGCAGGTGATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAA
TACTATTCAAACCATTGTTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTT
AGATTCAGTACATGGTGCAAATTATGTTCACAAAGCAACTTTATTCCCACATAATACTGG
TTTAGCCGCTACTTTCAATATTGAACATGCTACTACTGCTGCACAAATTACTTCAAAAGA
TACTGTTGCCGTTGGTATCCCTTGGGTGTTTGCACCAGTTTTAGGTATTGGTGTTCAACC
ATTATGGTCTCGTATCTATGAAACTTTTGGTGAAGATCCATACGTTGCATCAATGATGGG
TGCTGCTGCCGTTCGTGGTTTCCAAGGTGGTAACAATTCATTCGATGGTCCAATCAATGC
CCCATCTGCAGTTTGTACTGCTAAACATTATTTT----------ATTACAACAATTGGTT
GACACTGGTAAACCAGTAGTTTTAATTTTGGTTGAAGCTCGTCCAAGAATTTTACCACCA
GATTTCGTCTACAGTTGTGCTGCAGTTTTAATGGCTTATNTCCCAGGTAGTGAAGGTGGT
AAACCAATCGCCAACATTTTCATGGGTAATGTAAATCCACCTGGTCGTNTTCCTTTAACT
TATCCAGGTACTACTGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAAATGGT
GTCACCACTCCACTNTTCCAATTTGGTGATGGTCTTTNTTATACCACTTTTAACTATACC
AATNTCGCCTGTAGCAATTGTAAACCAATCTNTGGTCAATNTGGTAACTACACTGGTGTT
TTAGGTCAATCCTATACTTTCACTGTCACTGTCACAAACAATGGTAACGTTCAAGGTAAA
NACTCTGTTNTCTTANATCTCTCTGATCTTTGGGCTCAAGTTACTCCANAAGTTAAAATG
TTAANAGGTTTCCAAAAAGTTGATNTTANGCCAGCTAAATCTCAACAAATCTCTTTTACC
CTCAANGCCTATGAATTCTCCNTTATTGGTGTCGATAATAAAATTACTTTAGAATCGGGT
CAATTCATCATTANGGTTGGTAATCAACAATTAGGTTTATATTTACAATAAAAAAAAAAA
TTAAAAAAATTAAATTA
Length of connected seq. 1267
Full length Seq ID -
Full length Seq. -
Length of full length seq. -