CHF239 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF239
Library	CH (Link to library)
Clone ID	CHF239 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14187-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF2-B/CHF239Q.Seq.d/
Representative seq. ID	CHF239E (Link to Original site)
Representative DNA sequence	>CHF239 (CHF239Q) /CSM/CH/CHF2-B/CHF239Q.Seq.d/ AGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGATGGCATCAAATA AACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAAAGAAGATGCAG AGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTTCGGAGTAGATG AAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGATAAATTCATTG GTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAAACTTTCAAAAG AAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGAATCATTTAAAC AATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTCATGTGAAACAG TTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGTTAAAGCTATTG CTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACATCAAGAAGCAC TTTCACGTTACAATAAAGCAATTCTTTATGATAACACCAACGCTATTTACTTTGCAAATA GAGCTGCCACTTATTCTGCTTTACAAAACTTTGAAAAATCAATTGAAGATTGTCTTGAAG CAATTAAAAGAAATCCAAATTATGGTAAAGCATACACTAGAATGGGTTCTGCATATACAT CATTAGGTAAATTCTCAGAAGCAATGGAAGCATATAATAAAGCAATTGAATTAGAACCAA ATAATGAAACTTTTAAAGCATCACTTGCCAATGCTGAAAGACTTGCTGCTGCTGCAAACA ATCAAGCACCAGCTATGCCAAATATTCCAGGTATGCCAGATTTAGGTGGTTTAGATTTTG GTTCACTCTTAAGTAATCCAGCAATTAGAGGTTTAGCAAACAACTTAATGTCTGATCCAA AAATGAAAGAAATGATGGATAATGGTGATATGGCTAGTCTTCTCAATAATCCAGATTTAT TAAAAATGTTTGGTAATTTAGGTAAAAAGTAAAAATAATATTAATAATAATAATGAAAAA AAAT
sequence update	2002.10.27
Translated Amino Acid sequence	VTSNNIKNNNKLFEKMASNKQKLAVSILNFLKVSMKEDAENAESLQVAVECIRDVFGVDE NDSTLQVSAPLSEIFDKFIGENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLESFKQ FITILEQKGAFANEDSCETVIKATKQKFMESKAGEVKAIAEKLKNEGNAKLNEGKHQEAL SRYNKAILYDNTNAIYFANRAATYSALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTS LGKFSEAMEAYNKAIELEPNNETFKASLANAERLAAAANNQAPAMPNIPGMPDLGGLDFG SLLSNPAIRGLANNLMSDPKMKEMMDNGDMASLLNNPDLLKMFGNLGKKky*****kk
Translated Amino Acid sequence (All Frames)	Frame A: rlhlitlkiiinylrrwhqinknqlvftfkyqkkmqrmlkvyklqsnvlemfsem kmiqlykfqhhylkfsinslvkiipippppplpplqnfqkknyiklivkshtnflnhln nlsqflnkkvllqmkihvkqllkqqnksswkvkqvklklllknrmkvmlnmkvnikkh fhvtikqffmitptlftlqielplillyktlknqlkivlkqlkeiqimvkhtlewvlhih hvnsqkqwkhiikqlnnqimkllkhhlpmlkdllllqtikhqlcqifqvcqivvil vhsviqqlevqttcliqkkkwimviwlvfsiiqiykclvivksknninnnnek k Frame B: gyihk**iiedgiktkissyfklfksinerrcreckftscsrmyrcfrsr* kfnftsfstiinfrihwkyqyhhhhhyhhyktfkrriiksnlnpirtsiit iyhnstkrcfckrfmnsysnktkvhgksrssyckikerciertsrst ftlqsnslhqryllckschlfcftklkinrlssnkksklwsihngfciyi irilrsngsisnirtk*nfsitcqcktcccckqsstsyakysryarfrwfrfw ftlkssnrfskqlnvsknerndgwygssqsrfiknvwfrkvkiiliiimkk n Frame C: VTSNNIKNNNKLFEKMASNKQKLAVSILNFLKVSMKEDAENAESLQVAVECIRDVFGVDE NDSTLQVSAPLSEIFDKFIGENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLESFKQ FITILEQKGAFANEDSCETVIKATKQKFMESKAGEVKAIAEKLKNEGNAKLNEGKHQEAL SRYNKAILYDNTNAIYFANRAATYSALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTS LGKFSEAMEAYNKAIELEPNNETFKASLANAERLAAAANNQAPAMPNIPGMPDLGGLDFG SLLSNPAIRGLANNLMSDPKMKEMMDNGDMASLLNNPDLLKMFGNLGKKky*****kk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHF239 (CHF239Q) /CSM/CH/CHF2-B/CHF239Q.Seq.d/ 1457 0.0 CHC854 (CHC854Q) /CSM/CH/CHC8-C/CHC854Q.Seq.d/ 1449 0.0 CHD106 (CHD106Q) /CSM/CH/CHD1-A/CHD106Q.Seq.d/ 1447 0.0 VFE792 (VFE792Q) /CSM/VF/VFE7-D/VFE792Q.Seq.d/ 1443 0.0 VFD495 (VFD495Q) /CSM/VF/VFD4-D/VFD495Q.Seq.d/ 1441 0.0 CHD656 (CHD656Q) /CSM/CH/CHD6-C/CHD656Q.Seq.d/ 1441 0.0 CHB426 (CHB426Q) /CSM/CH/CHB4-B/CHB426Q.Seq.d/ 1441 0.0 VFI635 (VFI635Q) /CSM/VF/VFI6-B/VFI635Q.Seq.d/ 1437 0.0 CHF231 (CHF231Q) /CSM/CH/CHF2-B/CHF231Q.Seq.d/ 1437 0.0 VFK138 (VFK138Q) /CSM/VF/VFK1-B/VFK138Q.Seq.d/ 1435 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 34 6e-09 28 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 3e-07 18 AC117081\|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 34 6e-07 17 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 2e-06 17 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 44 2e-06 15 AP006628\|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 36 2e-06 24 AR271569\|AR271569.1 Sequence 1 from patent US 6503729. 34 3e-06 33 AL844507\|AL844507.1 Plasmodium falciparum chromosome 8. 38 5e-06 18 BX842643\|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 42 1e-05 22 AE017197\|AE017197.1 Rickettsia typhi str. Wilmington complete genome. 34 2e-05 24
dna update	2004. 9.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54VG4) RecName: Full=Small glutamine-rich tetratricopeptide re... 540 e-152 (Q32LM2) RecName: Full=Small glutamine-rich tetratricopeptide re... 126 1e-27 (O43765) RecName: Full=Small glutamine-rich tetratricopeptide re... 125 2e-27 AY894091_1(AY894091\|pid:none) Synthetic construct Homo sapiens c... 125 2e-27 AB169229_1(AB169229\|pid:none) Macaca fascicularis testis cDNA, c... 124 5e-27 BC074276_1(BC074276\|pid:none) Xenopus laevis MGC84046 protein, m... 123 9e-27 (Q8BJU0) RecName: Full=Small glutamine-rich tetratricopeptide re... 118 4e-25 AE014134_2947(AE014134\|pid:none) Drosophila melanogaster chromos... 117 7e-25 AY336496_1(AY336496\|pid:none) Schistosoma japonicum small glutam... 116 1e-24 BC048062_1(BC048062\|pid:none) Danio rerio zgc:55741, mRNA (cDNA ... 116 1e-24
protein update	2009. 4.12
PSORT	psg: 0.65 gvh: 0.46 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 40.0 %: nuclear 12.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for CHF239 is cyt
5' end seq. ID	CHF239F
5' end seq.	>CHF239F.Seq AGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGATGGCATCAAATA AACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAAAGAAGATGCAG AGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTTCGGAGTAGATG AAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGATAAATTCATTG GTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAAACTTTCAAAAG AAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGAATCATTTAAAC AATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTCATGTGAAACAG TTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGTTAAAGCTATTG CTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACATCAAGAAGCAC TTTCACGTTACAATAAAGCAATTCTTTATGATAACACCAACGCTATTTACTTTGCAAATA GAGCTGCCACTTATTCTGCTTTACAAAACTTTGAAAAATCAATNNNNNNNNNN
Length of 5' end seq.	653
3' end seq. ID	CHF239Z
3' end seq.	>CHF239Z.Seq NNNNNNNNNNGAAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGA ATCATTTAAACAATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTC ATGTGAAACAGTTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGT TAAAGCTATTGCTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACA TCAAGAAGCACTTTCACGTTACAATAAAGCAATTCTTTATGATAACACCAACGCTATTTA CTTTGCAAATAGAGCTGCCACTTATTCTGCTTTACAAAACTTTGAAAAATCAATTGAAGA TTGTCTTGAAGCAATTAAAAGAAATCCAAATTATGGTAAAGCATACACTAGAATGGGTTC TGCATATACATCATTAGGTAAATTCTCAGAAGCAATGGAAGCATATAATAAAGCAATTGA ATTAGAACCAAATAATGAAACTTTTAAAGCATCACTTGCCAATGCTGAAAGACTTGCTGC TGCTGCAAACAATCAAGCACCAGCTATGCCAAATATTCCAGGTATGCCAGATTTAGGTGG TTTAGATTTTGGTTCACTCTTAAGTAATCCAGCAATTAGAGGTTTAGCAAACAACTTAAT GTCTGATCCAAAAATGAAAGAAATGATGGATAATGGTGATATGGCTAGTCTTCTCAATAA TCCAGATTTATTAAAAATGTTTGGTAATTTAGGTAAAAAGTAAAAATAATATTAATAATA ATAATGAAAAAAAAT
Length of 3' end seq.	795
Connected seq. ID	CHF239P
Connected seq.	>CHF239P.Seq AGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGATGGCATCAAATA AACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAAAGAAGATGCAG AGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTTCGGAGTAGATG AAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGATAAATTCATTG GTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAAACTTTCAAAAG AAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGAATCATTTAAAC AATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTCATGTGAAACAG TTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGTTAAAGCTATTG CTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACATCAAGAAGCAC TTTCACGTTACAATAAAGCAATTCTTTATGATAACACCAACGCTATTTACTTTGCAAATA GAGCTGCCACTTATTCTGCTTTACAAAACTTTGAAAAATCAAT----------GAAGAAT TATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGAATCATTTAAACAATTTA TCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTCATGTGAAACAGTTATTA AAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGTTAAAGCTATTGCTGAAA AATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACATCAAGAAGCACTTTCAC GTTACAATAAAGCAATTCTTTATGATAACACCAACGCTATTTACTTTGCAAATAGAGCTG CCACTTATTCTGCTTTACAAAACTTTGAAAAATCAATTGAAGATTGTCTTGAAGCAATTA AAAGAAATCCAAATTATGGTAAAGCATACACTAGAATGGGTTCTGCATATACATCATTAG GTAAATTCTCAGAAGCAATGGAAGCATATAATAAAGCAATTGAATTAGAACCAAATAATG AAACTTTTAAAGCATCACTTGCCAATGCTGAAAGACTTGCTGCTGCTGCAAACAATCAAG CACCAGCTATGCCAAATATTCCAGGTATGCCAGATTTAGGTGGTTTAGATTTTGGTTCAC TCTTAAGTAATCCAGCAATTAGAGGTTTAGCAAACAACTTAATGTCTGATCCAAAAATGA AAGAAATGATGGATAATGGTGATATGGCTAGTCTTCTCAATAATCCAGATTTATTAAAAA TGTTTGGTAATTTAGGTAAAAAGTAAAAATAATATTAATAATAATAATGAAAAAAAAT
Length of connected seq.	1428
Full length Seq ID	CHF239E
Full length Seq.	>CHF239E.Seq AGGTTACATCTAATAACATTAAAAATAATAATAAATTATTTGAGAAGATGGCATCAAATA AACAAAAATTAGCAGTTAGTATTTTAAACTTTTTAAAAGTATCAATGAAAGAAGATGCAG AGAATGCTGAAAGTTTACAAGTTGCAGTCGAATGTATTAGAGATGTTTTCGGAGTAGATG AAAATGATTCAACTTTACAAGTTTCAGCACCATTATCTGAAATTTTCGATAAATTCATTG GTGAAAATAATACCAATACCACCACCACCACCACTACCACCACTACAAAACTTTCAAAAG AAGAATTATTAAATCAAACTTATAGTGAAATCCCATACGAACTTCTTGAATCATTTAAAC AATTTATCACAATTCTTGAACAAAAAGGTGCTTTTGCAAATGAAGATTCATGTGAAACAG TTATTAAAGCAACAAAACAAAAGTTCATGGAAAGTAAAGCAGGTGAAGTTAAAGCTATTG CTGAAAAATTAAAGAATGAAGGTAATGCTAAATTGAATGAAGGTAAACATCAAGAAGCAC TTTCACGTTACAATAAAGCAATTCTTTATGATAACACCAACGCTATTTACTTTGCAAATA GAGCTGCCACTTATTCTGCTTTACAAAACTTTGAAAAATCAATTGAAGATTGTCTTGAAG CAATTAAAAGAAATCCAAATTATGGTAAAGCATACACTAGAATGGGTTCTGCATATACAT CATTAGGTAAATTCTCAGAAGCAATGGAAGCATATAATAAAGCAATTGAATTAGAACCAA ATAATGAAACTTTTAAAGCATCACTTGCCAATGCTGAAAGACTTGCTGCTGCTGCAAACA ATCAAGCACCAGCTATGCCAAATATTCCAGGTATGCCAGATTTAGGTGGTTTAGATTTTG GTTCACTCTTAAGTAATCCAGCAATTAGAGGTTTAGCAAACAACTTAATGTCTGATCCAA AAATGAAAGAAATGATGGATAATGGTGATATGGCTAGTCTTCTCAATAATCCAGATTTAT TAAAAATGTTTGGTAATTTAGGTAAAAAGTAAAAATAATATTAATAATAATAATGAAAAA AAAT
Length of full length seq.	1084

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas