CHF230 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF230
Library	CH (Link to library)
Clone ID	CHF230 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16290-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF2-B/CHF230Q.Seq.d/
Representative seq. ID	CHF230P (Link to Original site)
Representative DNA sequence	>CHF230 (CHF230Q) /CSM/CH/CHF2-B/CHF230Q.Seq.d/ AATAATCATTTTATATATTTATATATATTTATATTAGATTTCATTTTTATTTTTAATTAC TATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTAACAATA TGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACGAAGTTG ATAATAAAAAAATAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATCAA ATACCAATTTAAATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAACCA ATGGTTCAACACCAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTCTG CAGAGGAGCTTGAAAAACAAAAGAAAGAAGAGGATGAAAAAAGAAAGAAATCAGAATTGG AGGCTGCTGCAGCCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGAAC AAGTTGAACTTGAAAGAAAAAGACGTGACGAAGAAATTAGAAGAACAAATGCAGCTGCTG CAAATGCTGCCAATAAAGAATTGAATGAACAAGTTGAAATTTCAAGTCTTGAACAAATGG GTAAACTTGATCCATCTTCAACCATTCATGATATGGTTTAGTTTCTTCCXXXXXXXXXXA ATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTTAGATCAATATC CATTCTTTACTCATCATGTAAAGAATCTTTATTATGATTTCGTTCATAGAGCTGCCAAAG GTTGTAAAGAGAAATGTATGGACGAATTNTATTNTTCAAGAACTATCTATTGGGAATTAA CTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGAAACTAAAACTG CTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAATCACTAAAAATG TTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCTTTGGAATGAAA TTCAAGCTCAAATCACTTGTCTNTCAAATGAACAATTGGAACAACTCTTTGAAGTTCAAG CAACTCGTGAACAATTAAAACAAGAAGAAAAGAAACAACAACAAATTTTAGAAAAATATT CTCAAATTGATGAGCAATTTTTAAAAGCTGCTTCATTATTTTGTAGACCATTATCTAATC CAACTCCATCTGCTTAAAAATAAAATTATAATAAATAAATAAATAAAAAAAAAATTAAAA AA
sequence update	2002.10.25
Translated Amino Acid sequence	nnhfiylyifildfififnyyynffnqylnyyysikvticlysrkkinlmtkrknmtkl iikkrlhkehfnqqvnqhqipiihhhqltmvqvvqpmvqhqiipmdqhqpiiittl qrslknkrkkrmkkernqnwrllqpllkrkkmkrnkeknklnlkekdvtkkleeqmqll qmlpiknMNKLKFQVLNKWVNLIHLQPFMIWFSFF--- ---NGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEXYXSRTIY WELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDL WNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRP LSNPTPSAknynkinkkkikk
Translated Amino Acid sequence (All Frames)	Frame A: nnhfiylyifildfififnyyynffnqylnyyysikvticlysrkkinlmtkrknmtkl iikkrlhkehfnqqvnqhqipiihhhqltmvqvvqpmvqhqiipmdqhqpiiittl qrslknkrkkrmkkernqnwrllqpllkrkkmkrnkeknklnlkekdvtkkleeqmqll qmlpiknMNKLKFQVLNKWVNLIHLQPFMIWFSFF--- ---NGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEXYXSRTIY WELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDL WNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRP LSNPTPSAknynkinkkkikk Frame B: iiilyiyiylyisflflititiffkintsititqlkqyvciqekriqkektrs* *knrdstrnistsksinikyqfkfisiisqwckcrfnqwfntkfqwintnlsqlc rgaktkerrgkkkeiriggccsrsckerrretkkrtstkkktrrnknkcscc kccqrietsnfkstngtsifnhsyglvss--- ---mastsmivyqiliwivinihsllimrifimisfielpkvvkrnvwtnxixqelsi gnlniqivhyqvlemiimklkllfvnwlqnylipfvkeslkmfysytisfwyqckltf gmkfklkslvxqmnnwnnslkfkqlvnnnkkkrnnnkfknilklmsnfkllhyfvdh yliqlhllknkiiinkikkklk Frame C: sfyifiyiyirfhfyflllqfflksipqllllnsnnmsvfkkkdksddkkkkhdevd nkkietpqgtfqpasqstsntnlnslassvnngasvgstngstpnnsngstptynhnnsa eelekqkkeedekrkkseleaaaavvakkkedeekqrkeqvelerkrrdeeirrtnaaaa naankelneqveissleqmgkldpsstihdmvfl--- ---whqhqsfikyygfrsisilyssckesllfrsscqrlremygrixxfknyll gintsrfitkykssnncclsigykiifhssknhkcfikviqflfgtnanpl ensssnhlsxktigttlsssnstiktrrketttnfrkifsnaifkscfiilti isnsiclkiklinkkkn*k
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHF230 (CHF230Q) /CSM/CH/CHF2-B/CHF230Q.Seq.d/ 1332 0.0 VHI820 (VHI820Q) /CSM/VH/VHI8-A/VHI820Q.Seq.d/ 1082 0.0 SHK632 (SHK632Q) /CSM/SH/SHK6-B/SHK632Q.Seq.d/ 1082 0.0 SHK591 (SHK591Q) /CSM/SH/SHK5-D/SHK591Q.Seq.d/ 1082 0.0 SHA511 (SHA511Q) /CSM/SH/SHA5-A/SHA511Q.Seq.d/ 1082 0.0 SHA157 (SHA157Q) /CSM/SH/SHA1-C/SHA157Q.Seq.d/ 1082 0.0 CHN790 (CHN790Q) /CSM/CH/CHN7-D/CHN790Q.Seq.d/ 1082 0.0 CHF430 (CHF430Q) /CSM/CH/CHF4-B/CHF430Q.Seq.d/ 1082 0.0 AHM524 (AHM524Q) /CSM/AH/AHM5-A/AHM524Q.Seq.d/ 1082 0.0 AFN584 (AFN584Q) /CSM/AF/AFN5-D/AFN584Q.Seq.d/ 1082 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AE017338\|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome. 40 0.005 16 AE014845\|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 34 0.014 11 BX842642\|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 34 0.030 14 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 0.032 17 AC114781\|AC114781.2 Homo sapiens BAC clone RP11-576N17 from 4, complete sequence. 48 0.071 6 AC008270\|AC008270.3 Homo sapiens BAC clone RP11-111G16 from 2, complete sequence. 36 0.077 7 AP004172\|AP004172.1 Mycoplasma penetrans HF-2 DNA, complete genome, section 3/5. 32 0.097 15 AC117080\|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 34 0.14 5 AC093112\|AC093112.4 Homo sapiens BAC clone RP11-621K10 from 2, complete sequence. 46 0.24 4 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 0.26 17
dna update	2004. 9.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116982_36(AC116982\|pid:none) Dictyostelium discoideum chromoso... 42 0.044 AB426138_1(AB426138\|pid:none) Physcomitrella patens PpDRP5B-2 ge... 41 0.097 AP009552_5662(AP009552\|pid:none) Microcystis aeruginosa NIES-843... 35 5.3
protein update	2009. 3.31
PSORT	psg: 1.00 gvh: 0.42 alm: 0.42 top: 0.43 tms: 0.00 mit: 0.25 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 36.0 %: nuclear 8.0 %: vesicles of secretory system 8.0 %: endoplasmic reticulum >> prediction for CHF230 is cyt
5' end seq. ID	CHF230F
5' end seq.	>CHF230F.Seq AATAATCATTTTATATATTTATATATATTTATATTAGATTTCATTTTTATTTTTAATTAC TATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTAACAATA TGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACGAAGTTG ATAATAAAAAAATAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATCAA ATACCAATTTAAATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAACCA ATGGTTCAACACCAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTCTG CAGAGGAGCTTGAAAAACAAAAGAAAGAAGAGGATGAAAAAAGAAAGAAATCAGAATTGG AGGCTGCTGCAGCCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGAAC AAGTTGAACTTGAAAGAAAAAGACGTGACGAAGAAATTAGAAGAACAAATGCAGCTGCTG CAAATGCTGCCAATAAAGAATTGAATGAACAAGTTGAAATTTCAAGTCTTGAACAAATGG GTAAACTTGATCCATCTTCAACCATTCATGATATGGTTTAGTTTCTTCCNNNNNNNNNN
Length of 5' end seq.	659
3' end seq. ID	CHF230Z
3' end seq.	>CHF230Z.Seq NNNNNNNNNNAATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTT AGATCAATATCCATTCTTTACTCATCATGTAAAGAATCTTTATTATGATTTCGTTCATAG AGCTGCCAAAGGTTGTAAAGAGAAATGTATGGACGAATTNTATTNTTCAAGAACTATCTA TTGGGAATTAACTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGA AACTAAAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAAT CACTAAAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCT TTGGAATGAAATTCAAGCTCAAATCACTTGTCTNTCAAATGAACAATTGGAACAACTCTT TGAAGTTCAAGCAACTCGTGAACAATTAAAACAAGAAGAAAAGAAACAACAACAAATTTT AGAAAAATATTCTCAAATTGATGAGCAATTTTTAAAAGCTGCTTCATTATTTTGTAGACC ATTATCTAATCCAACTCCATCTGCTTAAAAATAAAATTATAATAAATAAATAAATAAAAA AAAAATTAAAAAA
Length of 3' end seq.	613
Connected seq. ID	CHF230P
Connected seq.	>CHF230P.Seq AATAATCATTTTATATATTTATATATATTTATATTAGATTTCATTTTTATTTTTAATTAC TATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTAACAATA TGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACGAAGTTG ATAATAAAAAAATAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATCAA ATACCAATTTAAATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAACCA ATGGTTCAACACCAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTCTG CAGAGGAGCTTGAAAAACAAAAGAAAGAAGAGGATGAAAAAAGAAAGAAATCAGAATTGG AGGCTGCTGCAGCCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGAAC AAGTTGAACTTGAAAGAAAAAGACGTGACGAAGAAATTAGAAGAACAAATGCAGCTGCTG CAAATGCTGCCAATAAAGAATTGAATGAACAAGTTGAAATTTCAAGTCTTGAACAAATGG GTAAACTTGATCCATCTTCAACCATTCATGATATGGTTTAGTTTCTTCC----------A ATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTTAGATCAATATC CATTCTTTACTCATCATGTAAAGAATCTTTATTATGATTTCGTTCATAGAGCTGCCAAAG GTTGTAAAGAGAAATGTATGGACGAATTNTATTNTTCAAGAACTATCTATTGGGAATTAA CTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGAAACTAAAACTG CTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAATCACTAAAAATG TTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCTTTGGAATGAAA TTCAAGCTCAAATCACTTGTCTNTCAAATGAACAATTGGAACAACTCTTTGAAGTTCAAG CAACTCGTGAACAATTAAAACAAGAAGAAAAGAAACAACAACAAATTTTAGAAAAATATT CTCAAATTGATGAGCAATTTTTAAAAGCTGCTTCATTATTTTGTAGACCATTATCTAATC CAACTCCATCTGCTTAAAAATAAAATTATAATAAATAAATAAATAAAAAAAAAATTAAAA AA
Length of connected seq.	1252
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas