CHF209
Library CH
(Link to library)
Clone ID CHF209
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHF209 (CHF209Q) /CSM/CH/CHF2-A/CHF209Q.Seq.d/
XXXXXXXXXXTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAAT
TCCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAA
TGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAA
TGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAA
TGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAA
TGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGA
GAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCA
ACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGA
ACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCA
ACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGC
TGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACA
ACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCA
AGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAA
TCAAAAATAATTTAATCATTCTTGCTTTTTAAAAAACT
sequence update 2002. 9.10
Translated Amino Acid sequence
---KKLKMLQRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNE
ITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQE
QQDKLNQEKNQQLLEQEQNQK*fnhscflkn


Translated Amino Acid sequence (All Frames)
Frame A:
---srs*rcsreti*rns*fpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkim
klpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkr
mkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfn
krtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksk
nnkin*ikkkinny*nknkiknnliilaf*kt


Frame B:
---qevedaperlyeeihnsqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**
nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnpr
ttr*iksrkkstiirtrtkskii*sfllfkk


Frame C:
---KKLKMLQRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNE
ITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQE
QQDKLNQEKNQQLLEQEQNQK*fnhscflkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHR581 (CHR581Q) /CSM/CH/CHR5-D/CHR581Q.Seq.d/ 807 0.0
CHF209 (CHF209Q) /CSM/CH/CHF2-A/CHF209Q.Seq.d/ 807 0.0
AHD262 (AHD262Q) /CSM/AH/AHD2-C/AHD262Q.Seq.d/ 807 0.0
AHB660 (AHB660Q) /CSM/AH/AHB6-C/AHB660Q.Seq.d/ 807 0.0
AHB594 (AHB594Q) /CSM/AH/AHB5-D/AHB594Q.Seq.d/ 803 0.0
AHN570 (AHN570Q) /CSM/AH/AHN5-C/AHN570Q.Seq.d/ 801 0.0
SHJ828 (SHJ828Q) /CSM/SH/SHJ8-B/SHJ828Q.Seq.d/ 799 0.0
AHH676 (AHH676Q) /CSM/AH/AHH6-D/AHH676Q.Seq.d/ 799 0.0
SHF562 (SHF562Q) /CSM/SH/SHF5-C/SHF562Q.Seq.d/ 797 0.0
AHJ278 (AHJ278Q) /CSM/AH/AHJ2-D/AHJ278Q.Seq.d/ 795 0.0

own update 2003.10. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 704 0.0 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 1e-29 15
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 1e-12 19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 2e-10 21
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 36 6e-09 26
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 1e-08 15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 1e-08 22
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 40 2e-08 25
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 38 4e-08 20
AP004172|AP004172.1 Mycoplasma penetrans HF-2 DNA, complete ... 34 7e-08 15
dna update 2004. 9.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 274 3e-77
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 38 0.44
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 36 1.7
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 36 1.7
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom... 35 2.2
AF519793_1(AF519793|pid:none) Salmonella enterica strain SARB71 ... 35 2.2
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 2.2
CR450845_2(CR450845|pid:none) Zebrafish DNA sequence from clone ... 35 2.2
AF519789_1(AF519789|pid:none) Salmonella enterica strain SARB39 ... 35 2.8
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.8
protein update 2009. 5.18
PSORT

psg: 0.70 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CHF209 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHF209Z
3' end seq.
>CHF209Z.Seq
NNNNNNNNNNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAAT
TCCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAA
TGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAA
TGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAA
TGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAA
TGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGA
GAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCA
ACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGA
ACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCA
ACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGC
TGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACA
ACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCA
AGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAA
TCAAAAATAATTTAATCATTCTTGCTTTTTAAAAAACT
Length of 3' end seq. 818
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -