CHF196
Library CH
(Link to library)
Clone ID CHF196
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10711-1
Original site URL
Representative seq. ID CHF196P
(Link to Original site)
Representative DNA sequence
>CHF196 (CHF196Q) /CSM/CH/CHF1-D/CHF196Q.Seq.d/
ATAATTAAACAACTCCTCTCATACGACAAATATATAAATATAGATACATAATAGTAATAA
TAATAATAATAAAAATAGAGTAAATCAAATCAAATATATTATAATATACATTAAACAACA
CAAACACAATAACTATTAAAATGTATGGCAGAACTGCAAGAGCCTCTGAGCTCTTGGATA
ATTTAAAAGGTGAGATTGATGCCCTCAACCATGAATTATCATTATATAAACACCAAAAAG
ATGACTATGAAAGAAAATTTCAAAATCAATTAGCAGAATTAAATACAATACAACAAACAT
TATATGATTTGGAGAGGGGTCAAAATAAGATGAAGATACATTATGAAGAGGAGATTAGAC
AATTAAAGAGACAACTTGAACAACAAAATATAAATGCCAGTCAAAGAGATTTGAATAGTC
CTTCAACATTTAGATCAAATAGTCCAGCTCCACCAGCACAACATAATAACAACAACAATA
ATATCATCAACAACAACAATAATAATAACAATAATAATAATAACATGCAAAGAAATACAC
CAACCCCAACTATTCCTGATAAAGGTCAACCAAAACAAAGGACAACGTTCAGGATCTGGC
GAATTTTATCAACAACCXXXXXXXXXXTAAAAAGATTCAACATACTTTCTATGGTCATGA
ATTGGATATCTATTCTTTGGATTACTCAAGCGATGGTAGATTCATTGTCTCTGGTAGTGG
TGATAAGAAAGCAAAAATCTGGGATATTGAAAAAGGTAAATGTGCTTTCACACTTGGTAA
TGAAGAAGTTGGTCCAAAGAATGGTGTAACTTCTGTTGCTATGTCACCTGATGGTAGATT
GGTTGCAGCTGGTTCATTGGATAATATTGTACGTTTATGGGATGCTCAAACTGGTTATTT
CTTAGAGAGATATGAAGGCCATTTAGATTCAGTTTATTCAGTTGCATTCTCACCAGACGG
TAAATCTTTAGCATCAGGTAGTCTTGATAAATCCTTGAAACTTTGGGATTTATCCGGTTC
TAGATCACGTTCAAGATGTAGAGCTACCTTTAATGGTCACAAAGATTTTGTCTTATCTGT
AGCATTTTCACCAGACGGTAGTTGGTTAATTTCTGGTTCAAAGGATAGATCAGTCCAATT
TTGGGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTCATAAGAATTCTGTAAT
TAGTGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTGCTACTGGTTCAGGTGA
TTTCCGTTCAAGATTAGGAAATATGACTCTTAAACAATTCCACCTCTCTCACTCTCCCTC
CCCCTCCACTCTCGATAATTCATATTCTTTAATTACAACTTTAAT
sequence update 2002.10.25
Translated Amino Acid sequence
n*ttplirqiykyryiiviiiiikie*iksnil*YTLNNTNTITIKMYGRTARASELLDN
LKGEIDALNHELSLYKHQKDDYERKFQNQLAELNTIQQTLYDLERGQNKMKIHYEEEIRQ
LKRQLEQQNINASQRDLNSPSTFRSNSPAPPAQHNNNNNNIINNNNNNNNNNNNMQRNTP
TPTIPDKGQPKQRTTFRIWRILSTT---

---KKIQHTFYGHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPK
NGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASG
SLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNG
TTHMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLGNMTLKQFHLSHSPSPSTLDN
SYSLITTL


Translated Amino Acid sequence (All Frames)
Frame A:
iikqllsydkyinidt********k*sksnqiyynih*ttqtq*llkcmaelqeplsswi
i*kvrlmpstmnyhyintkkmtmkenfkin*qn*iqynkhymiwrgvkir*ryimkrrld
n*rdnlnnki*mpvkei*ivlqhldqivqlhqhniitttiisstttiiitiiiitckeih
qpqlflikvnqnkgqrsgsgefyqq---

---*kdstyflws*igylffgllkrw*ihclw*w**esknlgy*kr*mcfhtw**rswsk
ewcnfccyvt*w*igcswfig*yctfmgcsnwlflrei*rpfrfslfsciltrr*ifsir
*s**iletlgfirf*itfkm*syl*wsqrfclicsiftrr*lvnfwfkg*ispilgskkw
yhsydvtrs*efcn*ccplske*fswcvcywfr*fpfkirkyds*tipplslslplhsr*
fiffnynfn

Frame B:
*lnnsshttni*i*ihnsnnnnnknrvnqikyiiiyikqhkhnny*nvwqncksl*alg*
fkr*d*cpqp*iiii*tpkr*l*kkisksisrikynttnii*fgegsk*dedtl*rgd*t
ikett*ttkykcqskrfe*sfni*ik*ssststt**qqq*yhqqqq***q****hakkyt
npnys**rstktkdnvqdlanfinn---

---KKIQHTFYGHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPK
NGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASG
SLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNG
TTHMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLGNMTLKQFHLSHSPSPSTLDN
SYSLITTL

Frame C:
n*ttplirqiykyryiiviiiiikie*iksnil*YTLNNTNTITIKMYGRTARASELLDN
LKGEIDALNHELSLYKHQKDDYERKFQNQLAELNTIQQTLYDLERGQNKMKIHYEEEIRQ
LKRQLEQQNINASQRDLNSPSTFRSNSPAPPAQHNNNNNNIINNNNNNNNNNNNMQRNTP
TPTIPDKGQPKQRTTFRIWRILSTT---

---krfnilsmvmnwisilwitqamvdslslvvvirkqksgilkkvnvlshlvmkklvqr
mv*llllchlmvdwlqlvhwiilyvygmlklvis*rdmkai*iqfiqlhshqtvnl*hqv
vlinp*nfgiypvldhvqdvelplmvtkilsyl*hfhqtvvg*flvqridqsnfgiqemv
pli*cykviril*lvlpslqriilmvclllvqvisvqd*ei*llnnstsltlpppplsii
hil*lql*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF196 (CHF196Q) /CSM/CH/CHF1-D/CHF196Q.Seq.d/ 1610 0.0
AFC717 (AFC717Q) /CSM/AF/AFC7-A/AFC717Q.Seq.d/ 1433 0.0
CFF441 (CFF441Q) /CSM/CF/CFF4-B/CFF441Q.Seq.d/ 1423 0.0
AFM860 (AFM860Q) /CSM/AF/AFM8-C/AFM860Q.Seq.d/ 1415 0.0
AFC711 (AFC711Q) /CSM/AF/AFC7-A/AFC711Q.Seq.d/ 1390 0.0
SLH208 (SLH208Q) /CSM/SL/SLH2-A/SLH208Q.Seq.d/ 1346 0.0
CFB288 (CFB288Q) /CSM/CF/CFB2-D/CFB288Q.Seq.d/ 1285 0.0
CFI206 (CFI206Q) /CSM/CF/CFI2-A/CFI206Q.Seq.d/ 1273 0.0
SLA248 (SLA248Q) /CSM/SL/SLA2-B/SLA248Q.Seq.d/ 1211 0.0
AFI775 (AFI775Q) /CSM/AF/AFI7-D/AFI775Q.Seq.d/ 1183 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF079369|AF079369.1 Dictyostelium discoideum transcriptional repressor TUP1 mRNA, complete cds. 1287 0.0 4
AL112526|AL112526.1 Botrytis cinerea strain T4 cDNA library. 52 5e-04 2
AL112348|AL112348.1 Botrytis cinerea strain T4 cDNA library. 52 5e-04 2
AC091749|AC091749.8 Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence. 46 0.024 7
CL076331|CL076331.1 CH216-139E11_Sp6.1 CH216 Silurana tropicalis genomic clone CH216-139E11, genomic survey sequence. 52 0.024 1
AW335599|AW335599.1 S49C6 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence. 52 0.024 1
AL935062|AL935062.13 Zebrafish DNA sequence from clone CH211-231F23 in linkage group 9. 38 0.030 8
AL133322|AL133322.13 Human DNA sequence from clone RP1-257L16 on chromosome 6q12-13 Contains STSs and GSSs. 42 0.11 9
AC115911|AC115911.14 Mus musculus chromosome 6, clone RP24-481I20, complete sequence. 36 0.17 5
AP002027|AP002027.1 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:496L13. 34 0.21 2
dna update 2004. 9.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY082798_1(AY082798|pid:none) Penicillium marneffei TupA protein... 241 3e-62
AM920427_459(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 240 9e-62
AP007164_19(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ... 239 2e-61
AM270328_15(AM270328|pid:none) Aspergillus niger contig An15c001... 239 2e-61
U57061_1(U57061|pid:none) Neurospora crassa rco-1 gene, complete... 233 1e-59
AJ252128_1(AJ252128|pid:none) Yarrowia lipolytica tup1 gene for ... 229 2e-58
AY608603_1(AY608603|pid:none) Exophiala dermatitidis Tup1p gene,... 228 3e-58
BT065868_1(BT065868|pid:none) Zea mays full-length cDNA clone ZM... 226 1e-57
(Q09715) RecName: Full=Transcriptional repressor tup11; &CU3296... 214 4e-54
FM992688_6(FM992688|pid:none) Candida dubliniensis CD36 chromoso... 208 4e-52
protein update 2009. 3.31
PSORT

psg: 0.71 gvh: 0.37 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
24.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CHF196 is mit

5' end seq. ID CHF196F
5' end seq.
>CHF196F.Seq
ATAATTAAACAACTCCTCTCATACGACAAATATATAAATATAGATACATAATAGTAATAA
TAATAATAATAAAAATAGAGTAAATCAAATCAAATATATTATAATATACATTAAACAACA
CAAACACAATAACTATTAAAATGTATGGCAGAACTGCAAGAGCCTCTGAGCTCTTGGATA
ATTTAAAAGGTGAGATTGATGCCCTCAACCATGAATTATCATTATATAAACACCAAAAAG
ATGACTATGAAAGAAAATTTCAAAATCAATTAGCAGAATTAAATACAATACAACAAACAT
TATATGATTTGGAGAGGGGTCAAAATAAGATGAAGATACATTATGAAGAGGAGATTAGAC
AATTAAAGAGACAACTTGAACAACAAAATATAAATGCCAGTCAAAGAGATTTGAATAGTC
CTTCAACATTTAGATCAAATAGTCCAGCTCCACCAGCACAACATAATAACAACAACAATA
ATATCATCAACAACAACAATAATAATAACAATAATAATAATAACATGCAAAGAAATACAC
CAACCCCAACTATTCCTGATAAAGGTCAACCAAAACAAAGGACAACGTTCAGGATCTGGC
GAATTTTATCAACAACCNNNNNNNNNN
Length of 5' end seq. 627
3' end seq. ID CHF196Z
3' end seq.
>CHF196Z.Seq
NNNNNNNNNNTAAAAAGATTCAACATACTTTCTATGGTCATGAATTGGATATCTATTCTT
TGGATTACTCAAGCGATGGTAGATTCATTGTCTCTGGTAGTGGTGATAAGAAAGCAAAAA
TCTGGGATATTGAAAAAGGTAAATGTGCTTTCACACTTGGTAATGAAGAAGTTGGTCCAA
AGAATGGTGTAACTTCTGTTGCTATGTCACCTGATGGTAGATTGGTTGCAGCTGGTTCAT
TGGATAATATTGTACGTTTATGGGATGCTCAAACTGGTTATTTCTTAGAGAGATATGAAG
GCCATTTAGATTCAGTTTATTCAGTTGCATTCTCACCAGACGGTAAATCTTTAGCATCAG
GTAGTCTTGATAAATCCTTGAAACTTTGGGATTTATCCGGTTCTAGATCACGTTCAAGAT
GTAGAGCTACCTTTAATGGTCACAAAGATTTTGTCTTATCTGTAGCATTTTCACCAGACG
GTAGTTGGTTAATTTCTGGTTCAAAGGATAGATCAGTCCAATTTTGGGATCCAAGAAATG
GTACCACTCATATGATGTTACAAGGTCATAAGAATTCTGTAATTAGTGTTGCCCTCTCTC
CAAAGAATAATTCTCATGGTGTGTTTGCTACTGGTTCAGGTGATTTCCGTTCAAGATTAG
GAAATATGACTCTTAAACAATTCCACCTCTCTCACTCTCCCTCCCCCTCCACTCTCGATA
ATTCATATTCTTTAATTACAACTTTAAT
Length of 3' end seq. 748
Connected seq. ID CHF196P
Connected seq.
>CHF196P.Seq
ATAATTAAACAACTCCTCTCATACGACAAATATATAAATATAGATACATAATAGTAATAA
TAATAATAATAAAAATAGAGTAAATCAAATCAAATATATTATAATATACATTAAACAACA
CAAACACAATAACTATTAAAATGTATGGCAGAACTGCAAGAGCCTCTGAGCTCTTGGATA
ATTTAAAAGGTGAGATTGATGCCCTCAACCATGAATTATCATTATATAAACACCAAAAAG
ATGACTATGAAAGAAAATTTCAAAATCAATTAGCAGAATTAAATACAATACAACAAACAT
TATATGATTTGGAGAGGGGTCAAAATAAGATGAAGATACATTATGAAGAGGAGATTAGAC
AATTAAAGAGACAACTTGAACAACAAAATATAAATGCCAGTCAAAGAGATTTGAATAGTC
CTTCAACATTTAGATCAAATAGTCCAGCTCCACCAGCACAACATAATAACAACAACAATA
ATATCATCAACAACAACAATAATAATAACAATAATAATAATAACATGCAAAGAAATACAC
CAACCCCAACTATTCCTGATAAAGGTCAACCAAAACAAAGGACAACGTTCAGGATCTGGC
GAATTTTATCAACAACC----------TAAAAAGATTCAACATACTTTCTATGGTCATGA
ATTGGATATCTATTCTTTGGATTACTCAAGCGATGGTAGATTCATTGTCTCTGGTAGTGG
TGATAAGAAAGCAAAAATCTGGGATATTGAAAAAGGTAAATGTGCTTTCACACTTGGTAA
TGAAGAAGTTGGTCCAAAGAATGGTGTAACTTCTGTTGCTATGTCACCTGATGGTAGATT
GGTTGCAGCTGGTTCATTGGATAATATTGTACGTTTATGGGATGCTCAAACTGGTTATTT
CTTAGAGAGATATGAAGGCCATTTAGATTCAGTTTATTCAGTTGCATTCTCACCAGACGG
TAAATCTTTAGCATCAGGTAGTCTTGATAAATCCTTGAAACTTTGGGATTTATCCGGTTC
TAGATCACGTTCAAGATGTAGAGCTACCTTTAATGGTCACAAAGATTTTGTCTTATCTGT
AGCATTTTCACCAGACGGTAGTTGGTTAATTTCTGGTTCAAAGGATAGATCAGTCCAATT
TTGGGATCCAAGAAATGGTACCACTCATATGATGTTACAAGGTCATAAGAATTCTGTAAT
TAGTGTTGCCCTCTCTCCAAAGAATAATTCTCATGGTGTGTTTGCTACTGGTTCAGGTGA
TTTCCGTTCAAGATTAGGAAATATGACTCTTAAACAATTCCACCTCTCTCACTCTCCCTC
CCCCTCCACTCTCGATAATTCATATTCTTTAATTACAACTTTAAT
Length of connected seq. 1355
Full length Seq ID -
Full length Seq. -
Length of full length seq. -