>CHF188 (CHF188Q) /CSM/CH/CHF1-D/CHF188Q.Seq.d/
XXXXXXXXXXTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCA
GTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTT
TCTTTNTACTANATATTTNTATTA

---NCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIG
QKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGM
ECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPV
CKPKGHSL*kklkliyyffsxyxifxl

Frame A:
---kl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsnw
skmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*krn
gmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*ihts
lqtkrtltlkktkinilflffxlxixi


Frame B:
---NCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPIG
QKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRGM
ECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFTPV
CKPKGHSL*kklkliyyffsxyxifxl


Frame C:
---ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvqlv
knvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivkeew
nvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnshqf
anqkdthfkkn*n*yiisflxtxyxy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                       1144   0.0
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/                       1144   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                       1144   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                       1144   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                       1144   0.0
SHG737 (SHG737Q) /CSM/SH/SHG7-B/SHG737Q.Seq.d/                       1144   0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/                       1144   0.0
SHG163 (SHG163Q) /CSM/SH/SHG1-C/SHG163Q.Seq.d/                       1144   0.0
SHE431 (SHE431Q) /CSM/SH/SHE4-B/SHE431Q.Seq.d/                       1144   0.0
SHD535 (SHD535Q) /CSM/SH/SHD5-B/SHD535Q.Seq.d/                       1144   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117564|AC117564.2 Mus musculus clone RP23-312J18, LOW-PASS SEQUENCE SAMPLING.    42   0.003  3
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.010  4
AC073987|AC073987.4 Homo sapiens BAC clone RP11-441C24 from 2, complete sequence.    42   0.018  4
AC025368|AC025368.1 Homo sapiens chromosome 13 clone RP11-270C9 map 13, LOW-PASS SEQUENCE SAMPLING.    40   0.024  3
AC096653|AC096653.1 Homo sapiens BAC clone RP11-16P17 from 4, complete sequence.    42   0.029  3
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    40   0.037  8
AF160181|AF160181.1 Arabidopsis thaliana BAC T14A16.               42   0.18   2
BX649231|BX649231.4 Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20.    40   0.20   4
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence.    44   0.34   2
AC136697|AC136697.2 Mus musculus clone RP23-10K5, LOW-PASS SEQUENCE SAMPLING.    38   0.57   5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                324   1e-87
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                186   4e-46
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   1e-05
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.006
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    43   0.006
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.014
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    42   0.018
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 39   0.12
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   0.34
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.34

 psg: 0.75  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHF188 is cyt

>CHF188Z.Seq
NNNNNNNNNNTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAATACT
GGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAATTGGT
GGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCCAATT
GGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCACTGGT
GGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGGTCAT
TACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAGAGGA
ATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATGTTTA
GATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAAAAAT
CCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCACACCA
GTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATTTCTTT
TCTTTNTACTANATATTTNTATTA