>AFF667 (AFF667Q) /CSM/AF/AFF6-C/AFF667Q.Seq.d/
XXXXXXXXXXCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTAT
GTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTA
TCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTAT
GAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTT
CAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAG
AATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCA
AATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATT
TTAATGT

---TCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYE
PKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKAN
NYWIVKNSWGTSWGIKGYILM

Frame A:
---nmfiq*i*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*
akmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk
*lldr*kfmgylmgykrlhfn


Frame B:
---TCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYE
PKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKAN
NYWIVKNSWGTSWGIKGYILM


Frame C:
---hvysinlilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsims
qnvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqi
iigslkihgvphgv*kvtf*c

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        827   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        827   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        827   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        827   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        827   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                        827   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                        827   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                        827   0.0
SSG528 (SSG528Q) /CSM/SS/SSG5-B/SSG528Q.Seq.d/                        827   0.0
SSG365 (SSG365Q) /CSM/SS/SSG3-C/SSG365Q.Seq.d/                        827   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   827   0.0    1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   815   0.0    1
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   521   e-160  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88   1e-35  4
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88   5e-30  5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    66   2e-26  3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82   7e-12  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56   3e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46   2e-07  3
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50   2e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   270   1e-71
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   133   2e-30
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   133   2e-30
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   121   6e-27
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   120   2e-26
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   118   5e-26
(P13277) RecName: Full=Digestive cysteine proteinase 1;         ...   116   2e-25
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   116   2e-25
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...   116   3e-25
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   115   3e-25

 psg: 0.77  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for AFF667 is cyt

>AFF667Z.Seq
----------CAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTAT
GTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTA
TCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTAT
GAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTT
CAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAG
AATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCA
AATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATT
TTAATGT