>CHF185 (CHF185Q) /CSM/CH/CHF1-D/CHF185Q.Seq.d/
XXXXXXXXXXACTTCAATTCGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAAAAATT
CAATTTCCCAAAAATTCGTGATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGC
TCGTGTTGGTGTTGAGGTTAGAATCTTGAAAGATGGGCTTCAAAGAAAAACTCAAATCTT
GGATTCCTATTGTATTTTGGATAATCTTTCAATTCATCTCTATGATTGTAAACATACTTT
CCTCTATAAAATCTTTACAAATCTCCTTAAAAAGAAATTAAAATTCGAGGTTGAAAAAGC
AATCGCTCAACAAGTCGCAAAGATGGTTGCTGAAACAGATTACAAAATGGTCGGTAAATA
TCATGTTG

---SIRARINALPWEFEKFNFPKIRDRGLANILVDGRGARVGVEVRILKDGLQRKTQILD
SYCILDNLSIHLYDCKHTFLYKIFTNLLKKKLKFEVEKAIAQQVAKMVAETDYKMVGKYH
V

Frame A:
---lqfvlvsmlyhgslknsisqkfviev*qif*smvevlvlvlrles*kmgfkeklksw
ipivfwiifqfismivnilssikslqislkrn*nsrlkkqslnksqrwllkqitkwsvni
ml


Frame B:
---fnscsyqcftmgv*kiqfpkns**rfskyfsrw*rcscwc*g*nlerwaskknsnlg
fllyfg*sfnssl*l*tyfpl*nlyksp*keikirg*ksnrstsrkdgc*nrlqngr*is
c


Frame C:
---SIRARINALPWEFEKFNFPKIRDRGLANILVDGRGARVGVEVRILKDGLQRKTQILD
SYCILDNLSIHLYDCKHTFLYKIFTNLLKKKLKFEVEKAIAQQVAKMVAETDYKMVGKYH
V

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF185 (CHF185Q) /CSM/CH/CHF1-D/CHF185Q.Seq.d/                        710   0.0
CHR791 (CHR791Q) /CSM/CH/CHR7-D/CHR791Q.Seq.d/                        702   0.0
CHR486 (CHR486Q) /CSM/CH/CHR4-D/CHR486Q.Seq.d/                        702   0.0
CHR392 (CHR392Q) /CSM/CH/CHR3-D/CHR392Q.Seq.d/                        702   0.0
CHP518 (CHP518Q) /CSM/CH/CHP5-A/CHP518Q.Seq.d/                        702   0.0
CHP215 (CHP215Q) /CSM/CH/CHP2-A/CHP215Q.Seq.d/                        702   0.0
CHM786 (CHM786Q) /CSM/CH/CHM7-D/CHM786Q.Seq.d/                        702   0.0
CHM251 (CHM251Q) /CSM/CH/CHM2-C/CHM251Q.Seq.d/                        702   0.0
CHL585 (CHL585Q) /CSM/CH/CHL5-D/CHL585Q.Seq.d/                        702   0.0
CHL328 (CHL328Q) /CSM/CH/CHL3-B/CHL328Q.Seq.d/                        702   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC149477|AC149477.2 Zea mays clone ZMMBBb0493A01, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    42   0.017  4
BX957220|BX957220.1 Methanococcus maripaludis strain S2, complete sequence; segment 2/5.    36   0.14   7
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.             36   0.14   7
AL049869|AL049869.6 Human chromosome 14 DNA sequence BAC R-973N13 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    34   0.33   6
AC006751|AC006751.1 Caenorhabditis elegans clone Y39G10, WORKING DRAFT SEQUENCE, 29 unordered pieces.    42   0.38   7
AC079209|AC079209.6 Homo sapiens chromosome 8, clone RP11-1149M10, complete sequence.    40   0.38   4
AL646097|AL646097.25 Mouse DNA sequence from clone RP23-338M9 on chromosome 11.    36   0.39   5
AG562546|AG562546.1 Mus musculus molossinus DNA, clone:MSMg01-482F19.TJ, genomic survey sequence.    46   0.39   1
AC112008|AC112008.4 Rattus norvegicus clone CH230-236B13, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.51   7
AL132863|AL132863.1 Caenorhabditis elegans YAC Y37H2A.             30   0.62   5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017345_410(AE017345|pid:none) Cryptococcus neoformans var. neo...    41   0.011
AM269976_20(AM269976|pid:none) Aspergillus niger contig An01c029...    36   0.35
AM295250_2052(AM295250|pid:none) Staphylococcus carnosus subsp. ...    35   1.0
AM910988_214(AM910988|pid:none) Plasmodium knowlesi strain H chr...    33   3.0
AM920437_447(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    32   6.6

 psg: 0.75  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for CHF185 is nuc

>CHF185Z.Seq
NNNNNNNNNNACTTCAATTCGTGCTCGTATCAATGCTTTACCATGGGAGTTTGAAAAATT
CAATTTCCCAAAAATTCGTGATAGAGGTTTAGCAAATATTTTAGTCGATGGTAGAGGTGC
TCGTGTTGGTGTTGAGGTTAGAATCTTGAAAGATGGGCTTCAAAGAAAAACTCAAATCTT
GGATTCCTATTGTATTTTGGATAATCTTTCAATTCATCTCTATGATTGTAAACATACTTT
CCTCTATAAAATCTTTACAAATCTCCTTAAAAAGAAATTAAAATTCGAGGTTGAAAAAGC
AATCGCTCAACAAGTCGCAAAGATGGTTGCTGAAACAGATTACAAAATGGTCGGTAAATA
TCATGTTG