>CHF173 (CHF173Q) /CSM/CH/CHF1-D/CHF173Q.Seq.d/
XXXXXXXXXXCTTTGAATTTTAATGAACCAGAGTTTGCACAATTTATTGAAAGAGAAGGA
TTATATCCTCAAATTGATGGAGCAAACCAACAACAAGAGACATTGTTATGTTTTGCCTAT
AGAGTTAGTTTATATATCAAATTACATATCTCTTATGAGATCAGTTGTGGTGATCAAAAA
CCATTGGTAACAATTAATAAAGGTTTAGGAAATTGTTCATCTTATTCAAATCTATTCTGT
TCAATTATGAGATATAATGGTATACCTTGTAGAATAGTTAGTGGTGTGGTTTCAAGAAAA
AATAATGTCATTGATGAACCTCATGGTCAAAATGAATTTTATTTACCAAATATTGGTTGG
ATACCTTATAATGGTGCTGTAATGGGTGGTCCAAATGATAATTCAATCGCTTTTGCAAAA
TGTTTTGGTGATCTTTACTCTTATATGATTGATACTCATATCAATTTAAGTTATGATCAA
CAATCTAAATCAGAACATACAGAGAGACAAAGTATTTGTGGTGAAATGGTACCAACAAAA
TGTTATTTTCAACATGGTTCAACACCTTCTTTTGGTGCTCCTAAAAGGAACAGAATTCAC
AAGAAT

---LNFNEPEFAQFIEREGLYPQIDGANQQQETLLCFAYRVSLYIKLHISYEISCGDQKP
LVTINKGLGNCSSYSNLFCSIMRYNGIPCRIVSGVVSRKNNVIDEPHGQNEFYLPNIGWI
PYNGAVMGGPNDNSIAFAKCFGDLYSYMIDTHINLSYDQQSKSEHTERQSICGEMVPTKC
YFQHGSTPSFGAPKRNRIHKN

Frame A:
---fef**trvctiy*krriissn*wskpttrdivmfcl*s*fiyqityll*dqlw*skt
ignn**rfrklfilfksilfnyei*wytl*ns*wcgfkkk*ch**tswsk*ilftkywld
tl*wccngwsk**fnrfckmfw*slllyd*ysyqfkl*sti*irtyretkylw*ngtnkm
lfstwfntffwcs*keqnsqe


Frame B:
---LNFNEPEFAQFIEREGLYPQIDGANQQQETLLCFAYRVSLYIKLHISYEISCGDQKP
LVTINKGLGNCSSYSNLFCSIMRYNGIPCRIVSGVVSRKNNVIDEPHGQNEFYLPNIGWI
PYNGAVMGGPNDNSIAFAKCFGDLYSYMIDTHINLSYDQQSKSEHTERQSICGEMVPTKC
YFQHGSTPSFGAPKRNRIHKN


Frame C:
---*ilmnqslhnllkekdyilklmeqtnnkrhcyvlpielvyisnyislmrsvvviknh
w*qlikv*eivhliqiysvql*dimvylve*lvvwfqekimslmnlmvkmnfiyqilvgy
limvl*wvvqmiiqsllqnvlviftli*lilisi*vminnlnqniqrdkvfvvkwyqqnv
ifnmvqhlllvllkgteftr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF173 (CHF173Q) /CSM/CH/CHF1-D/CHF173Q.Seq.d/                       1181   0.0
CHE673 (CHE673Q) /CSM/CH/CHE6-D/CHE673Q.Seq.d/                       1181   0.0
CHS359 (CHS359Q) /CSM/CH/CHS3-C/CHS359Q.Seq.d/                       1176   0.0
CHL427 (CHL427Q) /CSM/CH/CHL4-B/CHL427Q.Seq.d/                       1168   0.0
CHG194 (CHG194Q) /CSM/CH/CHG1-D/CHG194Q.Seq.d/                       1168   0.0
CHD825 (CHD825Q) /CSM/CH/CHD8-B/CHD825Q.Seq.d/                       1168   0.0
CFF419 (CFF419Q) /CSM/CF/CFF4-A/CFF419Q.Seq.d/                       1168   0.0
CHL424 (CHL424Q) /CSM/CH/CHL4-A/CHL424Q.Seq.d/                       1166   0.0
CHI678 (CHI678Q) /CSM/CH/CHI6-D/CHI678Q.Seq.d/                       1166   0.0
CHD414 (CHD414Q) /CSM/CH/CHD4-A/CHD414Q.Seq.d/                       1160   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  1144   0.0    2
AC144923|AC144923.1 Mus musculus chromosome 7 clone RP23-366A16 map 7, LOW-PASS SEQUENCE SAMPLING.    42   0.005  3
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          42   0.072  16
CC905107|CC905107.1 t019i04ba.f1 TAMBT Bos taurus genomic clone t019i04ba, genomic survey sequence.    46   0.088  2
AE017197|AE017197.1 Rickettsia typhi str. Wilmington complete genome.    32   0.095  16
AC109859|AC109859.4 Rattus norvegicus clone CH230-27I8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.11   11
AC145236|AC145236.2 Rattus norvegicus clone CH230-379F1 strain Brown Norway, WORKING DRAFT SEQUENCE, 8 ordered pieces.    34   0.24   6
AC114883|AC114883.3 Rattus norvegicus clone RP31-466K16 strain Brown Norway, WORKING DRAFT SEQUENCE, 6 ordered pieces.    34   0.52   6
AP004552|AP004552.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1027_B09, WORKING DRAFT SEQUENCE, 1 ordered pieces.    32   0.54   6
Z95559|Z95559.1 Caenorhabditis elegans YAC Y41E3.                  46   0.66   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_14(AC115612|pid:none) Dictyostelium discoideum chromoso...   405   e-112
AM778877_13(AM778877|pid:none) Microcystis aeruginosa PCC 7806 g...    59   8e-08
AP009552_538(AP009552|pid:none) Microcystis aeruginosa NIES-843 ...    59   1e-07
CP001287_1055(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    57   3e-07
AI2227(AI2227) hypothetical protein alr3376 [imported] - Nostoc ...    54   3e-06
CP000117_3374(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    54   4e-06
CP001291_3855(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    54   4e-06
CP000439_34(CP000439|pid:none) Francisella tularensis subsp. nov...    52   1e-05
CP001037_5654(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    52   1e-05
CP000803_38(CP000803|pid:none) Francisella tularensis subsp. hol...    52   1e-05

 psg: 0.75  gvh: 0.35  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHF173 is cyt

>CHF173Z.Seq
NNNNNNNNNNCTTTGAATTTTAATGAACCAGAGTTTGCACAATTTATTGAAAGAGAAGGA
TTATATCCTCAAATTGATGGAGCAAACCAACAACAAGAGACATTGTTATGTTTTGCCTAT
AGAGTTAGTTTATATATCAAATTACATATCTCTTATGAGATCAGTTGTGGTGATCAAAAA
CCATTGGTAACAATTAATAAAGGTTTAGGAAATTGTTCATCTTATTCAAATCTATTCTGT
TCAATTATGAGATATAATGGTATACCTTGTAGAATAGTTAGTGGTGTGGTTTCAAGAAAA
AATAATGTCATTGATGAACCTCATGGTCAAAATGAATTTTATTTACCAAATATTGGTTGG
ATACCTTATAATGGTGCTGTAATGGGTGGTCCAAATGATAATTCAATCGCTTTTGCAAAA
TGTTTTGGTGATCTTTACTCTTATATGATTGATACTCATATCAATTTAAGTTATGATCAA
CAATCTAAATCAGAACATACAGAGAGACAAAGTATTTGTGGTGAAATGGTACCAACAAAA
TGTTATTTTCAACATGGTTCAACACCTTCTTTTGGTGCTCCTAAAAGGAACAGAATTCAC
AAGAAT