CHF162
Library CH
(Link to library)
Clone ID CHF162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15076-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHF162 (CHF162Q) /CSM/CH/CHF1-C/CHF162Q.Seq.d/
TGGCCTACTGGAAAAAGTCCAATTTCAATACATACACATACATATTTGTTTAATATAATT
TTTTTATATTTTTTTTTTTTTATTTCCCTTCCCTCATTTTTANACAATTTATANAAANAA
AAAGTCNTGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
WPTGKSPISIHTHTYLFNIIFLYFFFFISLPSFLXNLXKXKV---


Translated Amino Acid sequence (All Frames)
Frame A:
WPTGKSPISIHTHTYLFNIIFLYFFFFISLPSFLXNLXKXKV---


Frame B:
gllekvqfqyihihicli*ffyiffflfpfphfxtiyxxkks---


Frame C:
aywkksnfntytyifv*ynffiffffyfpslifxqfixxksx---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF162 (CHF162Q) /CSM/CH/CHF1-C/CHF162Q.Seq.d/ 115 2e-25
VFL547 (VFL547Q) /CSM/VF/VFL5-B/VFL547Q.Seq.d/ 86 1e-16
VSI496 (VSI496Q) /CSM/VS/VSI4-D/VSI496Q.Seq.d/ 66 1e-10
SSJ747 (SSJ747Q) /CSM/SS/SSJ7-B/SSJ747Q.Seq.d/ 64 5e-10
SLC877 (SLC877Q) /CSM/SL/SLC8-D/SLC877Q.Seq.d/ 64 5e-10
FC-AT20 (FC-AT20Q) /CSM/FC/FC-AT/FC-AT20Q.Seq.d/ 64 5e-10
FC-317 (FC-317Q) /CSM/CG/CG-FC/FC-317Q.Seq.d/ 64 5e-10
VSJ237 (VSJ237Q) /CSM/VS/VSJ2-B/VSJ237Q.Seq.d/ 38 0.031
VHC409 (VHC409Q) /CSM/VH/VHC4-A/VHC409Q.Seq.d/ 36 0.12
VFC432 (VFC432Q) /CSM/VF/VFC4-B/VFC432Q.Seq.d/ 36 0.12

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC150845|AC150845.4 Medicago truncatula clone mth2-150a2, WORKING DRAFT SEQUENCE, 12 ordered pieces. 42 1e-04 3
BB529664|BB529664.2 Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030003I09, 3' end partial sequence. 36 0.004 2
AE003446|AE003446.4 Drosophila melanogaster chromosome X, section 30 of 74 of the complete sequence. 50 0.009 1
AC013068|AC013068.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 50 0.009 1
AC023719|AC023719.4 Drosophila melanogaster X BAC RP98-4L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 50 0.009 1
AC023729|AC023729.5 Drosophila melanogaster X BAC RP98-39L4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 50 0.009 1
CQ589139|CQ589139.1 Sequence 16897 from Patent WO0171042. 50 0.009 1
AR509127|AR509127.1 Sequence 14087 from patent US 6703491. 50 0.009 1
AC021918|AC021918.4 Homo sapiens chromosome 18 clone RP11-138C24 map 18, WORKING DRAFT SEQUENCE, 20 unordered pieces. 36 0.030 6
AC117883|AC117883.5 Rattus norvegicus clone CH230-101A3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 36 0.033 4
dna update 2004. 9.27
Homology vs Protein

***** No hits found ******

Lambda K H
0.312 0.127 0.434

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 93,168,608
protein update 2009. 3.31
PSORT

psg: 1.00 gvh: 0.53 alm: 0.27 top: 0.47 tms: 0.07 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.26 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: mitochondrial
16.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: endoplasmic reticulum
12.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for CHF162 is mit

5' end seq. ID CHF162F
5' end seq.
>CHF162F.Seq
TGGCCTACTGGAAAAAGTCCAATTTCAATACATACACATACATATTTGTTTAATATAATT
TTTTTATATTTTTTTTTTTTTATTTCCCTTCCCTCATTTTTANACAATTTATANAAANAA
AAAGTCNTGNNNNNNNNNN
Length of 5' end seq. 139
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -