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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF161
Library CH
(Link to library)
Clone ID CHF161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1|Contig-U16470-1
Original site URL
Representative seq. ID CHF161P
(Link to Original site)
Representative DNA sequence 
>CHF161 (CHF161Q) /CSM/CH/CHF1-C/CHF161Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAACAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGXXXXXXXXXXGTTAGAATTGATATGAGTGAATATATGGAACAACATTCGGT
TTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAAC
TGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCA
TCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCA
AGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCA
ATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTG
TAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCT
CGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCT
TCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAA
CGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATT
GAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAA
ATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTTGATATT
ATAGATTTAAAACAACAACAACAACGTCCAGCTNCTCCAACCAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLTKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---VRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQV
WNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDK
VIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDAL
DSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVKKKIIISTLIL*i*
nnnnnvqllqpk
Translated Amino Acid sequence (All Frames) 
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
qpk---

---VRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQV
WNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDK
VIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDAL
DSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGVVVKKKIIISTLIL*i*
nnnnnvqllqpk

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fnkiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
nq---

---leli*vniwnnirflv*lvlhqvm*vmikvvn*lkpseedhtv*yclmklkklinkf
gmfsykywmkvvlpmvkvep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkik
slmklenisvqsf*ivsmi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*
iqlsmlhmiqslvvdh*nvtlkrilslnlvnsslvvn*kkikvllsrkrsssql*yyrfk
tttttssxsnqk

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLTKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---*n*ye*iygttfgfsfnwcstrlcrl*srwsin*srqkktiqcsiv**s*kssstsl
ecsltsig*rssyrwsr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*s
h**s*ktfpsrvfkssr*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfr
fnyqcci*snlww*tietlh*keych*t**thpww*ikrksrcccqekdhhlnfdiidlk
qqqqrpaxptkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF161 (CHF161Q) /CSM/CH/CHF1-C/CHF161Q.Seq.d/                       2236   0.0
SHG564 (SHG564Q) /CSM/SH/SHG5-C/SHG564Q.Seq.d/                       1479   0.0
SHG363 (SHG363Q) /CSM/SH/SHG3-C/SHG363Q.Seq.d/                       1479   0.0
SHC889 (SHC889Q) /CSM/SH/SHC8-D/SHC889Q.Seq.d/                       1479   0.0
SHC219 (SHC219Q) /CSM/SH/SHC2-A/SHC219Q.Seq.d/                       1479   0.0
CHS445 (CHS445Q) /CSM/CH/CHS4-B/CHS445Q.Seq.d/                       1479   0.0
CHS204 (CHS204Q) /CSM/CH/CHS2-A/CHS204Q.Seq.d/                       1479   0.0
CHR708 (CHR708Q) /CSM/CH/CHR7-A/CHR708Q.Seq.d/                       1479   0.0
CHR578 (CHR578Q) /CSM/CH/CHR5-D/CHR578Q.Seq.d/                       1479   0.0
CHR229 (CHR229Q) /CSM/CH/CHR2-B/CHR229Q.Seq.d/                       1479   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.   123   2e-32  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.          123   2e-32  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.         123   2e-32  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.   123   2e-32  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.          123   2e-32  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.         123   2e-32  3
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    68   1e-19  17
AX926714|AX926714.1 Sequence 4 from Patent WO03084989.             56   2e-18  3
AX926713|AX926713.1 Sequence 3 from Patent WO03084989.             56   2e-18  3
AE017161|AE017161.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 1 of 6 of the complete genome.    66   2e-18  3
dna update 2004. 9.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   278   4e-73
AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   277   7e-73
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   276   1e-72
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   275   3e-72
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   275   3e-72
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   274   4e-72
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   274   4e-72
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   274   4e-72
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   274   6e-72
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   273   9e-72
protein update 2009. 3.31
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHF161 is cyt
5' end seq. ID CHF161F
5' end seq. 
>CHF161F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAACAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGNNNNNNNNNN
Length of 5' end seq. 559
3' end seq. ID CHF161Z
3' end seq. 
>CHF161Z.Seq
NNNNNNNNNNGTTAGAATTGATATGAGTGAATATATGGAACAACATTCGGTTTCTCGTTT
AATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAAGCCGT
CAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGT
TTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAAC
CGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCT
TGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAA
AGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATAT
AATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAG
ATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTT
AGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTA
CATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGA
AAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTA
AAACAACAACAACAACGTCCAGCTNCTCCAACCAAAAAA
Length of 3' end seq. 759
Connected seq. ID CHF161P
Connected seq. 
>CHF161P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAACAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAG----------GTTAGAATTGATATGAGTGAATATATGGAACAACATTCGGT
TTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAAC
TGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCA
TCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCA
AGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCA
ATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTG
TAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCT
CGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCT
TCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAA
CGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATT
GAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAA
ATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTTGATATT
ATAGATTTAAAACAACAACAACAACGTCCAGCTNCTCCAACCAAAAAA
Length of connected seq. 1298
Full length Seq ID -
Full length Seq. -
Length of full length seq. -