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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF154
Library CH
(Link to library)
Clone ID CHF154
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15591-1
Original site URL
Representative seq. ID CHF154P
(Link to Original site)
Representative DNA sequence 
>CHF154 (CHF154Q) /CSM/CH/CHF1-C/CHF154Q.Seq.d/
AATAATAAATTATAATTTAAAATAAAAAAAAATTTTAAAATCTAAAAAATGGTAAAACAA
GATCCAAGAGATAAATCTTCATATTCTCCGAATCTATCAATACCAATAAATAATCAAGAA
GAACCAACCCTAAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAACAATAATAAT
AATAATATAAAACATAAAGATGAAGAANATGATTTTGAAGATAGTATTTATCAAATTGCA
AAAGAGCATGAAGGAGAAGAAGATGATGAATATTTCCCAATTCCATTAGATGAATTAATG
CCAAATCATGAANATGATGAATTAACAAAAAAGATTAAACAAACTACACCAGAGGATAAA
ACAGGTTTATATGTTTATTGTAGAAATGCANCATNTACAGTANAACATAGAGAAAATAAA
AAAGTTAAAATTAAATTATTAGATGATGTTTCATTTTTTTTANGACCANAACAAATGACA
TTAATTTXXXXXXXXXXGCNATTTTAGGTGCTCANATTGTATTCTTNTATTCAGNTTGTT
TCTTTGCTTNGAAATATTTNNNTTTTGAANATTAAANATCCTAATTAGCAGTAAAGAAAT
TAAAGNTANAGAAAAAAGTTATTGTNNGTAAAGAAGATGAAGAGCCNAANNGTAAAGTNA
NNTNTGAAGCATTAGAAAGAGTTAGTGATGATAATNATGATAATGCTGATATTTCTGAAN
TATGNNGATGATC
sequence update 2002.10.25
Translated Amino Acid sequence 
nnkl*fkikknfki*KMVKQDPRDKSSYSPNLSIPINNQEEPTLNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNKNNNNNNIKHKDEEXDFEDSIYQIAKEHEGEEDDEYFPIPLDELM
PNHEXDELTKKIKQTTPEDKTGLYVYCRNAXXTVXHRENKKVKIKLLDDVSFFLXPXQMT
LI---

---AILGAXIVFXYSXCFFAXKYXXFEX*xs*lavkklkxxkkvivxkedeepxxkvxxe
alervsddnxdnadisexxx*
Translated Amino Acid sequence (All Frames) 
Frame A:
nnkl*fkikknfki*KMVKQDPRDKSSYSPNLSIPINNQEEPTLNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNKNNNNNNIKHKDEEXDFEDSIYQIAKEHEGEEDDEYFPIPLDELM
PNHEXDELTKKIKQTTPEDKTGLYVYCRNAXXTVXHRENKKVKIKLLDDVSFFLXPXQMT
LI---

---AILGAXIVFXYSXCFFAXKYXXFEX*xs*lavkklkxxkkvivxkedeepxxkvxxe
alervsddnxdnadisexxx*

Frame B:
iinynlk*kkilkskkw*nkiqeinlhilriyqyq*iikknqp*iiiiitiiiiiiiiii
iiiiiiiiiiiiiiiktiiiii*nikmkxmilkivfiklqksmkekkmmnisqfh*mn*c
qimxmmn*qkrlnklhqrikqvymfivemxhxqxniekikklklny*mmfhffxdxnk*h
*f---

---xf*vlxlysxiqxvsllxnixxlxikxpn*q*rn*xxrkkllxvkkmksxxvkxxxk
h*kelvmixmimliflxyxdd

Frame C:
**iii*nkkkf*nlkngktrskr*ififsesintnk*srrtnpk*****q**********
***************kq****ykt*r*rx*f*r*ylsnckra*rrrr**ifpnsir*ina
ks*x**inkkd*tnytrg*nrficll*kcxxysxt*rk*ks*n*iir*cfiffxtxtndi
n---

---xfrcsxcilxfxlflcxeifxf*xlxilisskeikxxeksycx*rr*raxx*sxx*s
irks****x**c*yf*xmxmi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHF154 (CHF154Q) /CSM/CH/CHF1-C/CHF154Q.Seq.d/                        763   0.0
CHJ308 (CHJ308Q) /CSM/CH/CHJ3-A/CHJ308Q.Seq.d/                        476   e-133
CHL414 (CHL414Q) /CSM/CH/CHL4-A/CHL414Q.Seq.d/                        454   e-126
CHC517 (CHC517Q) /CSM/CH/CHC5-A/CHC517Q.Seq.d/                        333   2e-90
SHA186 (SHA186Q) /CSM/SH/SHA1-D/SHA186Q.Seq.d/                        307   1e-82
SHD469 (SHD469Q) /CSM/SH/SHD4-C/SHD469Q.Seq.d/                        262   7e-69
CHN389 (CHN389Q) /CSM/CH/CHN3-D/CHN389Q.Seq.d/                        262   7e-69
CFJ125 (CFJ125Q) /CSM/CF/CFJ1-B/CFJ125Q.Seq.d/                        262   7e-69
CHE717 (CHE717Q) /CSM/CH/CHE7-A/CHE717Q.Seq.d/                        242   7e-63
VHA794 (VHA794Q) /CSM/VH/VHA7-D/VHA794Q.Seq.d/                        170   2e-41
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF482384|AF482384.1 Dictyostelium discoideum ABC transporter AbcG5 (abcG5) gene, complete cds.   460   0.0    4
AF482385|AF482385.1 Dictyostelium discoideum ABC transporter AbcG6 (abcG6) gene, partial cds.   325   e-114  5
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12 section 8 of 9 of the complete sequence.    34   0.005  12
AJ562778|AJ562778.1 Cryptosporidium parvum GSS, PAC clone pica_0011_c11, SP6 end  sequence.    40   0.006  2
AP003191|AP003191.2 Clostridium perfringens str. 13 DNA, complete genome, section 7/10.    32   0.021  11
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   0.052  13
BZ848073|BZ848073.1 CH240_252C22.TV CHORI-240 Bos taurus genomic clone CH240_252C22, DNA sequence.    50   0.056  1
AP003362|AP003362.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 5/9.    36   0.062  10
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    36   0.063  12
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    40   0.063  10
dna update 2004. 9.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TV2) RecName: Full=ABC transporter G family member 5; AltNam...   231   1e-59
AF482384_1(AF482384|pid:none) Dictyostelium discoideum ABC trans...   229   7e-59
(Q54TV1) RecName: Full=ABC transporter G family member 6; AltNam...   184   3e-45
AL606935_7(AL606935|pid:none) Mouse DNA sequence from clone RP23...    34   5.8
AY324187_1(AY324187|pid:none) Mus musculus claspin mRNA, partial...    34   5.8
(Q80YR7) RecName: Full=Claspin;  &BC050848_1(BC050848|pid:none)        34   5.8
BC063632_1(BC063632|pid:none) Homo sapiens KIAA1009, mRNA (cDNA ...    33   10.0
BC115026_1(BC115026|pid:none) Homo sapiens claspin homolog (Xeno...    33   10.0
AB463085_1(AB463085|pid:none) Synthetic construct DNA, clone: pF...    33   10.0
AL354864_2(AL354864|pid:none) Human DNA sequence from clone RP11...    33   10.0
protein update 2009. 3.31
PSORT 

 psg: 0.81  gvh: 0.18  alm: 0.30  top: 0.37  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for CHF154 is cyt
5' end seq. ID CHF154F
5' end seq. 
>CHF154F.Seq
AATAATAAATTATAATTTAAAATAAAAAAAAATTTTAAAATCTAAAAAATGGTAAAACAA
GATCCAAGAGATAAATCTTCATATTCTCCGAATCTATCAATACCAATAAATAATCAAGAA
GAACCAACCCTAAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAACAATAATAAT
AATAATATAAAACATAAAGATGAAGAANATGATTTTGAAGATAGTATTTATCAAATTGCA
AAAGAGCATGAAGGAGAAGAAGATGATGAATATTTCCCAATTCCATTAGATGAATTAATG
CCAAATCATGAANATGATGAATTAACAAAAAAGATTAAACAAACTACACCAGAGGATAAA
ACAGGTTTATATGTTTATTGTAGAAATGCANCATNTACAGTANAACATAGAGAAAATAAA
AAAGTTAAAATTAAATTATTAGATGATGTTTCATTTTTTTTANGACCANAACAAATGACA
TTAATTTNNNNNNNNNN
Length of 5' end seq. 557
3' end seq. ID CHF154Z
3' end seq. 
>CHF154Z.Seq
NNNNNNNNNNGCNATTTTAGGTGCTCANATTGTATTCTTNTATTCAGNTTGTTTCTTTGC
TTNGAAATATTTNNNTTTTGAANATTAAANATCCTAATTAGCAGTAAAGAAATTAAAGNT
ANAGAAAAAAGTTATTGTNNGTAAAGAAGATGAAGAGCCNAANNGTAAAGTNANNTNTGA
AGCATTAGAAAGAGTTAGTGATGATAATNATGATAATGCTGATATTTCTGAANTATGNNG
ATGATC
Length of 3' end seq. 246
Connected seq. ID CHF154P
Connected seq. 
>CHF154P.Seq
AATAATAAATTATAATTTAAAATAAAAAAAAATTTTAAAATCTAAAAAATGGTAAAACAA
GATCCAAGAGATAAATCTTCATATTCTCCGAATCTATCAATACCAATAAATAATCAAGAA
GAACCAACCCTAAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAACAATAATAAT
AATAATATAAAACATAAAGATGAAGAANATGATTTTGAAGATAGTATTTATCAAATTGCA
AAAGAGCATGAAGGAGAAGAAGATGATGAATATTTCCCAATTCCATTAGATGAATTAATG
CCAAATCATGAANATGATGAATTAACAAAAAAGATTAAACAAACTACACCAGAGGATAAA
ACAGGTTTATATGTTTATTGTAGAAATGCANCATNTACAGTANAACATAGAGAAAATAAA
AAAGTTAAAATTAAATTATTAGATGATGTTTCATTTTTTTTANGACCANAACAAATGACA
TTAATTT----------GCNATTTTAGGTGCTCANATTGTATTCTTNTATTCAGNTTGTT
TCTTTGCTTNGAAATATTTNNNTTTTGAANATTAAANATCCTAATTAGCAGTAAAGAAAT
TAAAGNTANAGAAAAAAGTTATTGTNNGTAAAGAAGATGAAGAGCCNAANNGTAAAGTNA
NNTNTGAAGCATTAGAAAGAGTTAGTGATGATAATNATGATAATGCTGATATTTCTGAAN
TATGNNGATGATC
Length of connected seq. 783
Full length Seq ID -
Full length Seq. -
Length of full length seq. -