CHF137
Library CH
(Link to library)
Clone ID CHF137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16403-1
Original site URL
Representative seq. ID CHF137P
(Link to Original site)
Representative DNA sequence
>CHF137 (CHF137Q) /CSM/CH/CHF1-B/CHF137Q.Seq.d/
ATTGAAATTTGAAAGTGATAAAGAAAAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAG
CTATCTTCCAGAGGATAAGGGTTCACTTCAAAAAGAATTTGTTAAACATGTTGAATATAC
TTTGGCTCAAACCAAGAGTGAATGTACTGATTTCTCAAGTTTCCAAGCACTTTCATATTG
TACCAGGGATAGACTCATTGAGAGATGGAAGGATACCAAACTTTTCTTTAAACAAAAGAA
TGTTAAACAAGTAAACTATATGTCTTTGGAATTTTTATTGGGTAGATCTCTTCAAAACTC
TCTTAGTGCATTGGGCTTAGTTGGTAAATATTCTGATGCTTTAATGGACTTGGGTTTCAA
ACTTGAAGATCTCTATGATGAAGAAAGAGATGCAGGTTTAGGTAATGGTGGTCTTGGTCA
TTTAGCTGCATGTTTTATGGATTCATTAGCAACTTGTAATTTTCCAGGATATGGCTATGG
TTTACGTTATAAATTTGGTATGTTTTATCAAACATTAGTTGATGGTGAACAAGTTGAATT
ACCAGATTATTGGTTAAATTATGGATCACCATGGGAAATTGAACGTTTTGGATGTTAGCT
ATCCAATTAATTTCTATGGTAAXXXXXXXXXXTCAACATATTTCAACCGCTGGTACTGAA
GCATCTGGTACAAGTAATATGAAATTCAGTATGAATGGTGGTCTTATCATTGGTACTTTG
GATGGTGCAAACATTGAAATTCGTGATGCCATTGGTCATGAAAATGTGTACATCTTTGGT
GCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCA
GACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAA
CAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTAT
GATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCT
AAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGA
ACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCA
GTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCA
AATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACT
TCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCA
AAACAAACTACAAAAGGTTTTAATATTGGGGTCAACCAGGTAATCCAACAAATTAATTAA
ATAATAA
sequence update 2002.10.25
Translated Amino Acid sequence
*nlkvikkknklyfglswqaifqrirvhfkknllnmlnilwlkprvnvlisqvskhfhiv
pgidslrdgripnfslnkrmlnk*ticlwnfywvdlfktllvhwa*lvnilml*wtwvsn
lkismmkkemqv*vmvvlvi*lhvlwih*qlvifqdmamvyvinlvcfikh*lmvnklny
qiig*IMDHHGKLNVLDVSYPINFYG---

---QHISTAGTEASGTSNMKFSMNGGLIIGTLDGANIEIRDAIGHENVYIFGARSEEVNK
VKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQDIINSVSGGNDHYILSYDFGSYLDI
QNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNEEA
RSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQTTKGFN
IGVNQVIQQIN*ii


Translated Amino Acid sequence (All Frames)
Frame A:
iei*k**rkrtsftlgflgklssrg*gftskric*tc*iyfgsnqe*my*flkfpstfil
yqg*th*emegyqtfl*tkec*tsklyvfgifig*isskls*ciglsw*if*cfnglgfq
t*rsl**rkrcrfr*wwswsfscmfygfisnl*fsriwlwftl*iwyvlsnis*w*ts*i
trllvklwitmgn*tfwmlaiqlismv---

---styfnrwy*siwyk*yeiqyewwsyhwyfgwckh*ns*chws*kcvhlwcsf*rgqq
skenys*wkihtrh*mgscfnry*rryfwst*tipryyqlc*wwq*slhs*l*fwfllgy
skfn*srfqr*s*mg*kinygfsllw*iqfr*nh*rvcstnlgy*rmeetrssssfk*rs
sffissttiwftk*yqcyln*kiitfnfc*tnfcfsiicylww**nqqhfktktnykrf*
ywgqpgnptn*lnn

Frame B:
lkfesdkekeqallwaflasylpedkgslqkefvkhveytlaqtksectdfssfqalsyc
trdrlierwkdtklffkqknvkqvnymslefllgrslqnslsalglvgkysdalmdlgfk
ledlydeerdaglgngglghlaacfmdslatcnfpgygyglrykfgmfyqtlvdgeqvel
pdywlnygspweierfgc*lsn*flw*---

---QHISTAGTEASGTSNMKFSMNGGLIIGTLDGANIEIRDAIGHENVYIFGARSEEVNK
VKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQDIINSVSGGNDHYILSYDFGSYLDI
QNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEEWKRPGPVPVSNEEA
RSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQTTKGFN
IGVNQVIQQIN*ii

Frame C:
*nlkvikkknklyfglswqaifqrirvhfkknllnmlnilwlkprvnvlisqvskhfhiv
pgidslrdgripnfslnkrmlnk*ticlwnfywvdlfktllvhwa*lvnilml*wtwvsn
lkismmkkemqv*vmvvlvi*lhvlwih*qlvifqdmamvyvinlvcfikh*lmvnklny
qiig*IMDHHGKLNVLDVSYPINFYG---

---nifqplvlkhlvqvi*nsv*mvvlslvlwmvqtlkfvmplvmkmctslvlvlkrstk
*rklfmmenshqtldglvf*pllkkillvhmnnskilstllvvamiitflvmilvltwif
kiqlikiskielnglknqlwlqfvvvnsvqieplksmlnkfgvlkngrdqvqfqfqmkkl
vly*fhhhlvhqmismlsqlkdyhl*lllnkllllhyllslvvikpttl*nqnklqkvli
lgstr*snklik**

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF137 (CHF137Q) /CSM/CH/CHF1-B/CHF137Q.Seq.d/ 2690 0.0
SHA771 (SHA771Q) /CSM/SH/SHA7-C/SHA771Q.Seq.d/ 1489 0.0
CHL678 (CHL678Q) /CSM/CH/CHL6-D/CHL678Q.Seq.d/ 1489 0.0
CHF191 (CHF191Q) /CSM/CH/CHF1-D/CHF191Q.Seq.d/ 1489 0.0
AHO116 (AHO116Q) /CSM/AH/AHO1-A/AHO116Q.Seq.d/ 1489 0.0
AHF548 (AHF548Q) /CSM/AH/AHF5-B/AHF548Q.Seq.d/ 1489 0.0
AHF204 (AHF204Q) /CSM/AH/AHF2-A/AHF204Q.Seq.d/ 1489 0.0
AHE134 (AHE134Q) /CSM/AH/AHE1-B/AHE134Q.Seq.d/ 1489 0.0
AHD572 (AHD572Q) /CSM/AH/AHD5-C/AHD572Q.Seq.d/ 1489 0.0
AHD128 (AHD128Q) /CSM/AH/AHD1-B/AHD128Q.Seq.d/ 1489 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 1413 0.0 3
X62142|X62142.1 D. discoideum glpV gene for glycogen phosphorylase 1. 127 2e-50 8
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4. 76 9e-19 2
AL409683|AL409683.1 T3 end of clone XAV0AA001D03 of library XAV0AA from strain CBS 379 of Saccharomyces exiguus. 66 2e-18 3
X04604|X04604.1 Yeast gene for glycogen phosphorylase (EC 2.4.1.1). 56 5e-13 3
L33835|L33835.1 Saccharomyces cerevisiae glucan synthase (KRE6) gene, complete cds, glycogen phosphorylase (GPH1) gene, complete cds, CDC28/cdc2-related kinase gene, complete cds. 56 4e-12 3
U28371|U28371.1 Saccharomyces cerevisiae chromosome XVI cosmid 9584. 56 4e-11 4
CR378679|CR378679.1 Photobacterium profundum SS9 chromosome 2; segment 5/7. 76 2e-09 1
AL424964|AL424964.1 clone BA0AB002D11 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 36 5e-07 5
CR382126|CR382126.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis. 62 3e-05 2
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR954211_102(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 203 1e-50
CP000591_95(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 ... 202 2e-50
(Q00766) RecName: Full=Glycogen phosphorylase 1; Short=... 202 2e-50
DQ279077_1(DQ279077|pid:none) Chlamydomonas reinhardtii PhoB (PH... 191 2e-47
CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 188 3e-46
BX538351_58(BX538351|pid:none) Cryptosporidium parvum chromosome... 187 6e-46
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 187 1e-45
X62142_1(X62142|pid:none) D. discoideum glpV gene for glycogen p... 186 1e-45
AY050312_1(AY050312|pid:none) Trichomonas vaginalis glycogen pho... 183 1e-44
AY050311_1(AY050311|pid:none) Entamoeba histolytica glycogen pho... 182 3e-44
protein update 2009. 3.31
PSORT

psg: 0.72 gvh: 0.37 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for CHF137 is cyt

5' end seq. ID CHF137F
5' end seq.
>CHF137F.Seq
ATTGAAATTTGAAAGTGATAAAGAAAAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAG
CTATCTTCCAGAGGATAAGGGTTCACTTCAAAAAGAATTTGTTAAACATGTTGAATATAC
TTTGGCTCAAACCAAGAGTGAATGTACTGATTTCTCAAGTTTCCAAGCACTTTCATATTG
TACCAGGGATAGACTCATTGAGAGATGGAAGGATACCAAACTTTTCTTTAAACAAAAGAA
TGTTAAACAAGTAAACTATATGTCTTTGGAATTTTTATTGGGTAGATCTCTTCAAAACTC
TCTTAGTGCATTGGGCTTAGTTGGTAAATATTCTGATGCTTTAATGGACTTGGGTTTCAA
ACTTGAAGATCTCTATGATGAAGAAAGAGATGCAGGTTTAGGTAATGGTGGTCTTGGTCA
TTTAGCTGCATGTTTTATGGATTCATTAGCAACTTGTAATTTTCCAGGATATGGCTATGG
TTTACGTTATAAATTTGGTATGTTTTATCAAACATTAGTTGATGGTGAACAAGTTGAATT
ACCAGATTATTGGTTAAATTATGGATCACCATGGGAAATTGAACGTTTTGGATGTTAGCT
ATCCAATTAATTTCTATGGTAANNNNNNNNNN
Length of 5' end seq. 632
3' end seq. ID CHF137Z
3' end seq.
>CHF137Z.Seq
NNNNNNNNNNTCAACATATTTCAACCGCTGGTACTGAAGCATCTGGTACAAGTAATATGA
AATTCAGTATGAATGGTGGTCTTATCATTGGTACTTTGGATGGTGCAAACATTGAAATTC
GTGATGCCATTGGTCATGAAAATGTGTACATCTTTGGTGCTCGTTCTGAAGAGGTCAACA
AAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAGATGGGCTCGTGTTT
TAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCAAGATATTATCAACT
CTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGGTTCTTACTTGGATA
TTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGCTAAAAAATCAATTA
TGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAAAGAGTATGCTCAAC
AAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGTTTCAAATGAAGAAG
CTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATATCAATGCTATCTCAA
TTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTCTCCATTATCTGTTA
TCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAACTACAAAAGGTTTTA
ATATTGGGGTCAACCAGGTAATCCAACAAATTAATTAAATAATAA
Length of 3' end seq. 765
Connected seq. ID CHF137P
Connected seq.
>CHF137P.Seq
ATTGAAATTTGAAAGTGATAAAGAAAAAGAACAAGCTTTACTTTGGGCTTTCTTGGCAAG
CTATCTTCCAGAGGATAAGGGTTCACTTCAAAAAGAATTTGTTAAACATGTTGAATATAC
TTTGGCTCAAACCAAGAGTGAATGTACTGATTTCTCAAGTTTCCAAGCACTTTCATATTG
TACCAGGGATAGACTCATTGAGAGATGGAAGGATACCAAACTTTTCTTTAAACAAAAGAA
TGTTAAACAAGTAAACTATATGTCTTTGGAATTTTTATTGGGTAGATCTCTTCAAAACTC
TCTTAGTGCATTGGGCTTAGTTGGTAAATATTCTGATGCTTTAATGGACTTGGGTTTCAA
ACTTGAAGATCTCTATGATGAAGAAAGAGATGCAGGTTTAGGTAATGGTGGTCTTGGTCA
TTTAGCTGCATGTTTTATGGATTCATTAGCAACTTGTAATTTTCCAGGATATGGCTATGG
TTTACGTTATAAATTTGGTATGTTTTATCAAACATTAGTTGATGGTGAACAAGTTGAATT
ACCAGATTATTGGTTAAATTATGGATCACCATGGGAAATTGAACGTTTTGGATGTTAGCT
ATCCAATTAATTTCTATGGTAA----------TCAACATATTTCAACCGCTGGTACTGAA
GCATCTGGTACAAGTAATATGAAATTCAGTATGAATGGTGGTCTTATCATTGGTACTTTG
GATGGTGCAAACATTGAAATTCGTGATGCCATTGGTCATGAAAATGTGTACATCTTTGGT
GCTCGTTCTGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCA
GACACTAGATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAA
CAATTCCAAGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTAT
GATTTTGGTTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCT
AAATGGGCTAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGA
ACCATTAAAGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCA
GTTCCAGTTTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCA
AATGATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACT
TCTGCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCA
AAACAAACTACAAAAGGTTTTAATATTGGGGTCAACCAGGTAATCCAACAAATTAATTAA
ATAATAA
Length of connected seq. 1377
Full length Seq ID -
Full length Seq. -
Length of full length seq. -