CHF128 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF128
Library	CH (Link to library)
Clone ID	CHF128 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16291-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF1-B/CHF128Q.Seq.d/
Representative seq. ID	CHF128P (Link to Original site)
Representative DNA sequence	>CHF128 (CHF128Q) /CSM/CH/CHF1-B/CHF128Q.Seq.d/ ACAAATTTATAATTAAAAGAATCTAATTTAGGTTGGATTTTAGATAGTGGTAAAAAGAGT CCTACAATGGAAAATCAACAATATACAGATATACCATTGGTAGACTCAGCCGCACCAAGT GGTAGTAGTAGTAGTGGCGCTGGTGGTAGTAACTCAAAGCCATCATTACAAACCATATCA CCATTACATAAAAGTAATAATAGTAGTAATAATAATATAGGGGAGGATCAATATTCTCCA CCATCAAGTTTAAGCAGAGCACCATCATCAACCATATCAAGTGGTGCAGCAAGAAAGTCA ACGAAATCATCATCATTACGTTCAAATAAACCCAAAAAGAAGCCAAAGGCATTGAAAAAA GTTAAAAAGAAGAAATATATAGGTAGTAGTAGAAACATTTTCATAAATCAACCAGAAAGA AATATACCATTCAAATTTATTCATAATAAAATCTCCACAACAAAATATACACCATGGTCA TTCATACCAAAGAATTTATACGAACAATTTAGAAGAGCTGCAAATTTCTATTTTCTTGTA ATTGCAGTCATTCAATTAATTCCAGGTATCTCACCAGTTAATGCTTATACAACTTGGATX XXXXXXXXXGGTCTTCCAATTATTGTTTGTGCTATCTTTGATCAAGATGTCTCTGCTGAA TCATCACAAAAATATCCTCNGACTATATGCAAGTGGTCAAAAAGATAGTGAATTCAATTT ACGTGTACTTTGGGTTTGGATCGTTGAAGCTTGGATTCATTCAGTGGTTATTTTCTTTGG TGTTTATGGTCTCTACAGTCATGGTAGTACTTTATTGGAATCTGGTGACACTTTGGACCT TTGGGCAATGGGTCAAAATATTTTCATTCTCGTGGTTATAACCGTAAACTTTAAGTTGGC ATTTGAAACTCGTTATTGGACTTGGATTACTCATTTCTCAATTTGGGCTTCCATTTTAAT TTGGTTCGCTTGGGTAGCAGTTTTAGCTGCAATTCCAGGTATTGGTTCAACTTCAAGTGG TGATATCTATTATGTTGCCTATAAAATATTTGCAAGTCCATCATTCTGGTTATCAATAGC TGTGCTACCAACCATTTGTTTGGCACCCGACGTCATTTACAAATACATCCAAAGAGATGT TAAACCTTACAACTATCAAATCGTTCAAGAAATCGAGAAAATCTATGGTAAACCATCCGA TATTATGAGTAAAGAAAACTGGCTAAATTTTCAAAGACCAANATATCGAAGAAAGGGTGT GAATCTCCACA
sequence update	2002.10.25
Translated Amino Acid sequence	tnl*LKESNLGWILDSGKKSPTMENQQYTDIPLVDSAAPSGSSSSGAGGSNSKPSLQTIS PLHKSNNSSNNNIGEDQYSPPSSLSRAPSSTISSGAARKSTKSSSLRSNKPKKKPKALKK VKKKKYIGSSRNIFINQPERNIPFKFIHNKISTTKYTPWSFIPKNLYEQFRRAANFYFLV IAVIQLIPGISPVNAYTTW--- ---VFQLLFVLSLIKMSLLNHHKNILXLYASGQKDSEFNLRVLWVWIVEAWIHSVVIFFG VYGLYSHGSTLLESGDTLDLWAMGQNIFILVVITVNFKLAFETRYWTWITHFSIWASILI WFAWVAVLAAIPGIGSTSSGDIYYVAYKIFASPSFWLSIAVLPTICLAPDVIYKYIQRDV KPYNYQIVQEIEKIYGKPSDIMSKENWLNFQRPXYRRKGVNLH
Translated Amino Acid sequence (All Frames)	Frame A: tnlLKESNLGWILDSGKKSPTMENQQYTDIPLVDSAAPSGSSSSGAGGSNSKPSLQTIS PLHKSNNSSNNNIGEDQYSPPSSLSRAPSSTISSGAARKSTKSSSLRSNKPKKKPKALKK VKKKKYIGSSRNIFINQPERNIPFKFIHNKISTTKYTPWSFIPKNLYEQFRRAANFYFLV IAVIQLIPGISPVNAYTTW--- ---glpiivcaifdqdvsaessqkypxtickwskriqftctlgldrsldsfsgyflw clwslqswyfigiwhfgplgngskyfhsrgynrklvginslldldysflnlgfhfn lvrlgssfscnsrywfnfkwyllcclnicksiilvinscatnhlfgtrrhlqihpkrc tlqlsnrsrnrenlwtiryyerklakfsktxiskkgcesp Frame B: qiynknlivgfivvkrvlqwkinniqiyhwtqphqvvvvvvalvvvtqshhykpyh hyikviivviiigrinilhhqvaehhhqpyqvvqqesqrnhhhyvqinpkrsqrhkk lkrrnivvvetfsinqkeiyhsnlfiikspqqnihhghsyqriytnnleelqisifl* lqsfnfqvshqlmliqlg--- ---VFQLLFVLSLIKMSLLNHHKNILXLYASGQKDSEFNLRVLWVWIVEAWIHSVVIFFG VYGLYSHGSTLLESGDTLDLWAMGQNIFILVVITVNFKLAFETRYWTWITHFSIWASILI WFAWVAVLAAIPGIGSTSSGDIYYVAYKIFASPSFWLSIAVLPTICLAPDVIYKYIQRDV KPYNYQIVQEIEKIYGKPSDIMSKENWLNFQRPXYRRKGVNLH Frame C: kfiikrifrldfrwkesyngkstiyrytigrlsrtkw**wrwwlkaiitnhit itk*****yrggsifstikfkqstiinhikwcskkvneiiiitfktqkeakgieks keeiyrkhfhkstrkkytiqiysnlhnkiytmvihtkefirtiksckflfscn cshsinsryltsclynld--- ---ssnyclcylsrclciitkissdymqvvkkivnsiyvyfgfgslklgfiqwlfslv fmvstvmvvlywnlvtlwtfgqwvkifsfswlptlswhlklviglgllisqfglpff gslgqflqfqvlvqlqvvisimlpikylqvhhsgyqlcyqpfvwhptsftntskeml nlttiksfkksrksmvnhpilvkktgifkdqxieerv*ist
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHF128 (CHF128Q) /CSM/CH/CHF1-B/CHF128Q.Seq.d/ 1705 0.0 VHD203 (VHD203Q) /CSM/VH/VHD2-A/VHD203Q.Seq.d/ 1279 0.0 CHF824 (CHF824Q) /CSM/CH/CHF8-A/CHF824Q.Seq.d/ 1279 0.0 AHJ122 (AHJ122Q) /CSM/AH/AHJ1-A/AHJ122Q.Seq.d/ 1279 0.0 AHH240 (AHH240Q) /CSM/AH/AHH2-B/AHH240Q.Seq.d/ 1279 0.0 AHF409 (AHF409Q) /CSM/AH/AHF4-A/AHF409Q.Seq.d/ 1279 0.0 AHF195 (AHF195Q) /CSM/AH/AHF1-D/AHF195Q.Seq.d/ 1279 0.0 AFC445 (AFC445Q) /CSM/AF/AFC4-B/AFC445Q.Seq.d/ 1279 0.0 SHD378 (SHD378Q) /CSM/SH/SHD3-D/SHD378Q.Seq.d/ 1271 0.0 CHI353 (CHI353Q) /CSM/CH/CHI3-C/CHI353Q.Seq.d/ 1271 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 54 2e-12 3 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 52 1e-08 5 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 46 3e-06 5 BX154986\|BX154986.1 Danio rerio genomic clone DKEY-114G23, genomic survey sequence. 36 9e-06 4 AE014818\|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 50 1e-05 2 AE014834\|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence. 40 1e-05 13 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 44 1e-05 5 AE014823\|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 36 3e-05 12 AC117080\|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 44 1e-04 5 AC117076\|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 44 1e-04 4
dna update	2004. 9.26
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AM485878_6(AM485878\|pid:none) Vitis vinifera contig VV78X183642.... 111 3e-24 CR380953_263(CR380953\|pid:none) Candida glabrata strain CBS138 c... 112 7e-24 (P39524) RecName: Full=Probable phospholipid-transporting ATPase... 107 1e-22 (Q29449) RecName: Full=Probable phospholipid-transporting ATPase... 105 3e-21 AP008216_580(AP008216\|pid:none) Oryza sativa (japonica cultivar-... 91 1e-20 BC109318_1(BC109318\|pid:none) Homo sapiens ATPase, aminophosphol... 102 2e-20 AC084010_1(AC084010\|pid:none) Homo sapiens BAC clone RP11-49F1 f... 102 2e-20 BC094235_1(BC094235\|pid:none) Mus musculus ATPase, aminophosphol... 102 4e-20 AK220560_1(AK220560\|pid:none) Mus musculus mRNA for mKIAA4233 pr... 102 4e-20 (P70704) RecName: Full=Probable phospholipid-transporting ATPase... 102 4e-20
protein update	2009. 3.31
PSORT	psg: 0.75 gvh: 0.53 alm: 0.23 top: 0.60 tms: 0.40 mit: 0.17 mip: 0.00 nuc: 0.35 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 1.00 m_ : 0.00 44.0 %: plasma membrane 16.0 %: nuclear 12.0 %: vacuolar 12.0 %: endoplasmic reticulum 8.0 %: mitochondrial 4.0 %: Golgi 4.0 %: cytoplasmic >> prediction for CHF128 is pla
5' end seq. ID	CHF128F
5' end seq.	>CHF128F.Seq ACAAATTTATAATTAAAAGAATCTAATTTAGGTTGGATTTTAGATAGTGGTAAAAAGAGT CCTACAATGGAAAATCAACAATATACAGATATACCATTGGTAGACTCAGCCGCACCAAGT GGTAGTAGTAGTAGTGGCGCTGGTGGTAGTAACTCAAAGCCATCATTACAAACCATATCA CCATTACATAAAAGTAATAATAGTAGTAATAATAATATAGGGGAGGATCAATATTCTCCA CCATCAAGTTTAAGCAGAGCACCATCATCAACCATATCAAGTGGTGCAGCAAGAAAGTCA ACGAAATCATCATCATTACGTTCAAATAAACCCAAAAAGAAGCCAAAGGCATTGAAAAAA GTTAAAAAGAAGAAATATATAGGTAGTAGTAGAAACATTTTCATAAATCAACCAGAAAGA AATATACCATTCAAATTTATTCATAATAAAATCTCCACAACAAAATATACACCATGGTCA TTCATACCAAAGAATTTATACGAACAATTTAGAAGAGCTGCAAATTTCTATTTTCTTGTA ATTGCAGTCATTCAATTAATTCCAGGTATCTCACCAGTTAATGCTTATACAACTTGGATN NNNNNNNNN
Length of 5' end seq.	609
3' end seq. ID	CHF128Z
3' end seq.	>CHF128Z.Seq NNNNNNNNNNGGTCTTCCAATTATTGTTTGTGCTATCTTTGATCAAGATGTCTCTGCTGA ATCATCACAAAAATATCCTCNGACTATATGCAAGTGGTCAAAAAGATAGTGAATTCAATT TACGTGTACTTTGGGTTTGGATCGTTGAAGCTTGGATTCATTCAGTGGTTATTTTCTTTG GTGTTTATGGTCTCTACAGTCATGGTAGTACTTTATTGGAATCTGGTGACACTTTGGACC TTTGGGCAATGGGTCAAAATATTTTCATTCTCGTGGTTATAACCGTAAACTTTAAGTTGG CATTTGAAACTCGTTATTGGACTTGGATTACTCATTTCTCAATTTGGGCTTCCATTTTAA TTTGGTTCGCTTGGGTAGCAGTTTTAGCTGCAATTCCAGGTATTGGTTCAACTTCAAGTG GTGATATCTATTATGTTGCCTATAAAATATTTGCAAGTCCATCATTCTGGTTATCAATAG CTGTGCTACCAACCATTTGTTTGGCACCCGACGTCATTTACAAATACATCCAAAGAGATG TTAAACCTTACAACTATCAAATCGTTCAAGAAATCGAGAAAATCTATGGTAAACCATCCG ATATTATGAGTAAAGAAAACTGGCTAAATTTTCAAAGACCAANATATCGAAGAAAGGGTG TGAATCTCCACA
Length of 3' end seq.	672
Connected seq. ID	CHF128P
Connected seq.	>CHF128P.Seq ACAAATTTATAATTAAAAGAATCTAATTTAGGTTGGATTTTAGATAGTGGTAAAAAGAGT CCTACAATGGAAAATCAACAATATACAGATATACCATTGGTAGACTCAGCCGCACCAAGT GGTAGTAGTAGTAGTGGCGCTGGTGGTAGTAACTCAAAGCCATCATTACAAACCATATCA CCATTACATAAAAGTAATAATAGTAGTAATAATAATATAGGGGAGGATCAATATTCTCCA CCATCAAGTTTAAGCAGAGCACCATCATCAACCATATCAAGTGGTGCAGCAAGAAAGTCA ACGAAATCATCATCATTACGTTCAAATAAACCCAAAAAGAAGCCAAAGGCATTGAAAAAA GTTAAAAAGAAGAAATATATAGGTAGTAGTAGAAACATTTTCATAAATCAACCAGAAAGA AATATACCATTCAAATTTATTCATAATAAAATCTCCACAACAAAATATACACCATGGTCA TTCATACCAAAGAATTTATACGAACAATTTAGAAGAGCTGCAAATTTCTATTTTCTTGTA ATTGCAGTCATTCAATTAATTCCAGGTATCTCACCAGTTAATGCTTATACAACTTGGAT- ---------GGTCTTCCAATTATTGTTTGTGCTATCTTTGATCAAGATGTCTCTGCTGAA TCATCACAAAAATATCCTCNGACTATATGCAAGTGGTCAAAAAGATAGTGAATTCAATTT ACGTGTACTTTGGGTTTGGATCGTTGAAGCTTGGATTCATTCAGTGGTTATTTTCTTTGG TGTTTATGGTCTCTACAGTCATGGTAGTACTTTATTGGAATCTGGTGACACTTTGGACCT TTGGGCAATGGGTCAAAATATTTTCATTCTCGTGGTTATAACCGTAAACTTTAAGTTGGC ATTTGAAACTCGTTATTGGACTTGGATTACTCATTTCTCAATTTGGGCTTCCATTTTAAT TTGGTTCGCTTGGGTAGCAGTTTTAGCTGCAATTCCAGGTATTGGTTCAACTTCAAGTGG TGATATCTATTATGTTGCCTATAAAATATTTGCAAGTCCATCATTCTGGTTATCAATAGC TGTGCTACCAACCATTTGTTTGGCACCCGACGTCATTTACAAATACATCCAAAGAGATGT TAAACCTTACAACTATCAAATCGTTCAAGAAATCGAGAAAATCTATGGTAAACCATCCGA TATTATGAGTAAAGAAAACTGGCTAAATTTTCAAAGACCAANATATCGAAGAAAGGGTGT GAATCTCCACA
Length of connected seq.	1261
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas