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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF111
Library CH
(Link to library)
Clone ID CHF111
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16423-1
Original site URL
Representative seq. ID CHF111P
(Link to Original site)
Representative DNA sequence 
>CHF111 (CHF111Q) /CSM/CH/CHF1-A/CHF111Q.Seq.d/
AAAAATATTGTTTTTTTTTTTTTATNTTTNATTATATTAAAAAATTATTTTTAAATTATN
TNTNTAAAATTATAAATTTTTTTAAANAATTAGNCNTTTTNTGCCANTNGGAAATANCAA
ANATANCGXXXXXXXXXXTGTGATACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCA
ACTACCTGTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTC
CGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGTCTCCACATC
GGTAATGTTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATCTACGTTCAT
CGTATTGGTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAA
AAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATT
CCAGATTGGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCA
AAATCAAATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGATGATAACCGT
GGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGTAATGATAGA
AGAGAAGATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAGCAATGGTGGTTCA
TATAATTAAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTAAT
TCAATATNAATTAAAATCAT
sequence update 2002.10.25
Translated Amino Acid sequence 
KYCFFFFXFXYIKKLFLNYXXKIINFFKXLXXXCXXEIXXIX---

---CDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNV
NLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIPDW
FEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGYSNNRNDRRED
KSDYSMHHPYFSSNGGSYN*tftschsfnkk**ihfnsixiki
Translated Amino Acid sequence (All Frames) 
Frame A:
knivffflxxiilknyf*ixxxkl*iflxn*xfxaxxkxqxx---

---CDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNV
NLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIPDW
FEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGYSNNRNDRRED
KSDYSMHHPYFSSNGGSYN*tftschsfnkk**ihfnsixiki

Frame B:
kilffffyxxly*kiifklxx*nykff*xixxfxpxgnxkxx---

---villptf*ikeisqlpvfmvi*lnqkekmhfnlsvllqlhs**qlilhqevstsvml
iwlsistclptyistfivlvepeeqekkv*qfpssmkrinqlvlnf*n**klqikifqig
lkrwytisvclkvhqtqnqivhstnltivitiemitvvvmvvvvvvmevtvttvmieeki
nqitqcithtlaamvvhiikhsphvirliknnksiliqyxlks

Frame C:
KYCFFFFXFXYIKKLFLNYXXKIINFFKXLXXXCXXEIXXIX---

---*ysyllfkskkfpnylysw*fnstrkrkctsifpffcnsilssn*ycikrsphr*c*
fgyqfrlayrhtylrssyw*nrksrkkrfsnfllq*ke*tswc*tfeinesfksrysrlv
*kdgtqspyv*rsiklkik*siqqilq*ssq*r**pwwlwwwwww*wrlq*qp***krr*
irllnaspil*qqwwfi*lnihlmsfv**kiinpf*fnxn*nh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ404 (VHQ404Q) /CSM/VH/VHQ4-A/VHQ404Q.Seq.d/                        870   0.0
VHP734 (VHP734Q) /CSM/VH/VHP7-B/VHP734Q.Seq.d/                        870   0.0
VHP681 (VHP681Q) /CSM/VH/VHP6-D/VHP681Q.Seq.d/                        870   0.0
VHP588 (VHP588Q) /CSM/VH/VHP5-D/VHP588Q.Seq.d/                        870   0.0
VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/                        870   0.0
VHO596 (VHO596Q) /CSM/VH/VHO5-D/VHO596Q.Seq.d/                        870   0.0
VHO585 (VHO585Q) /CSM/VH/VHO5-D/VHO585Q.Seq.d/                        870   0.0
VHN781 (VHN781Q) /CSM/VH/VHN7-D/VHN781Q.Seq.d/                        870   0.0
VHN546 (VHN546Q) /CSM/VH/VHN5-B/VHN546Q.Seq.d/                        870   0.0
VHN331 (VHN331Q) /CSM/VH/VHN3-B/VHN331Q.Seq.d/                        870   0.0
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR382133|CR382133.1 Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii.    48   0.017  13
CD291103|CD291103.1 StrPu538.004262 Sea urchin embryo 7hr cleavage stage cDNA library MPMGp538 Strongylocentrotus purpuratus cDNA clone CALTp538A2015;MPI_538_15A20 5', mRNA sequence.    38   0.036  2
AE017300|AE017300.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, section 14 of 14 of the complete sequence.    50   0.056  1
AE011560|AE011560.1 Leptospira interrogans serovar lai str. 56601 chromosome I, section 369 of 397 of the complete sequence.    50   0.056  1
AC006874|AC006874.1 Caenorhabditis elegans clone Y54E10, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   0.12   2
AC024810|AC024810.1 Caenorhabditis elegans cosmid Y54E10A, complete sequence.    38   0.13   2
BM160481|BM160481.1 EST563004 PyBS Plasmodium yoelii yoelii cDNA clone PYCJR87 5' end, mRNA sequence.    38   0.15   2
C63050|C63050.1 C.elegans cDNA clone yk321c5 : 5' end, single read.    38   0.17   2
C68731|C68731.1 C.elegans cDNA clone yk303d4 : 5' end, single read.    38   0.17   2
AV186655|AV186655.1 Caenorhabditis elegans cDNA clone:yk502e7 : 5' end, single read.    38   0.17   2
dna update 2004. 9.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;...   297   2e-79
(Q6Z4K6) RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; ...   147   4e-34
(Q75HJ0) RecName: Full=DEAD-box ATP-dependent RNA helicase 37;  ...   143   7e-33
EU953399_1(EU953399|pid:none) Zea mays clone 1406878 unknown mRNA.    142   9e-33
AM048814_1(AM048814|pid:none) Platynereis dumerilii mRNA for PL1...   141   3e-32
(Q2R1M8) RecName: Full=DEAD-box ATP-dependent RNA helicase 52C; ...   140   3e-32
AM444101_1(AM444101|pid:none) Vitis vinifera contig VV78X103110....   140   3e-32
AL137082_10(AL137082|pid:none) Arabidopsis thaliana DNA chromoso...   140   3e-32
AY062446_1(AY062446|pid:none) Arabidopsis thaliana ATP-dependent...   140   4e-32
(Q9P6U9) RecName: Full=ATP-dependent RNA helicase ded-1;        ...   139   1e-31
protein update 2009. 3.31
PSORT 

 psg: 0.97  gvh: 0.48  alm: 0.45  top: 0.60  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHF111 is cyt
5' end seq. ID CHF111F
5' end seq. 
>CHF111F.Seq
AAAAATATTGTTTTTTTTTTTTTATNTTTNATTATATTAAAAAATTATTTTTAAATTATN
TNTNTAAAATTATAAATTTTTTTAAANAATTAGNCNTTTTNTGCCANTNGGAAATANCAA
ANATANCGNNNNNNNNNN
Length of 5' end seq. 138
3' end seq. ID CHF111Z
3' end seq. 
>CHF111Z.Seq
NNNNNNNNNNTGTGATACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCAACTACCTG
TATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTCCGTTCTTT
TGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGTCTCCACATCGGTAATGT
TAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATCTACGTTCATCGTATTGG
TAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAAAAGAATAA
ACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATTCCAGATTG
GTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCAAAATCAAA
TAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGATGATAACCGTGGTGGTTA
TGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGTAATGATAGAAGAGAAGA
TAAATCAGATTACTCAATGCATCACCCATACTTTAGCAGCAATGGTGGTTCATATAATTA
AACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTAATTCAATATN
AATTAAAATCAT
Length of 3' end seq. 672
Connected seq. ID CHF111P
Connected seq. 
>CHF111P.Seq
AAAAATATTGTTTTTTTTTTTTTATNTTTNATTATATTAAAAAATTATTTTTAAATTATN
TNTNTAAAATTATAAATTTTTTTAAANAATTAGNCNTTTTNTGCCANTNGGAAATANCAA
ANATANCG----------TGTGATACTCTTACCTACTTTTTAAATCAAAGAAATTTCCCA
ACTACCTGTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTTCAATCTTTC
CGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGTCTCCACATC
GGTAATGTTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATCTACGTTCAT
CGTATTGGTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTCTTCAATGAA
AAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAATCAAGATATT
CCAGATTGGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCATCAAACTCA
AAATCAAATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGATGATAACCGT
GGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGTAATGATAGA
AGAGAAGATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAGCAATGGTGGTTCA
TATAATTAAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTAAT
TCAATATNAATTAAAATCAT
Length of connected seq. 790
Full length Seq ID -
Full length Seq. -
Length of full length seq. -