CHF107 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHF107
Library	CH (Link to library)
Clone ID	CHF107 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16510-1\|Contig-U16524-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHF1-A/CHF107Q.Seq.d/
Representative seq. ID	CHF107P (Link to Original site)
Representative DNA sequence	>CHF107 (CHF107Q) /CSM/CH/CHF1-A/CHF107Q.Seq.d/ AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA ATATAGCTATAATCTATAATTACTATANGTAAAATTACGTATACATATATAAATAATTAT TATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXXXTCT CCATCTTCATNTGCTGCAAGCTNTTCTCCATCTTCATNTGCTGCAAGCTCTTCCCCATCT TCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCT TCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCT TCATCTGCATCATNTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACT ACAACTGCAACTACAACCGCAACCACA
sequence update	2002.10.25
Translated Amino Acid sequence	tq***kqgiiikysynlllxvklrihiiiiiiivfknk*INNKKK--- ---SPSSXAASXSPSSXAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSS SASSSSASXAATTAATTIATTAATTTATTTATT
Translated Amino Acid sequence (All Frames)	Frame A: nsviiiikiitiirnynqiiilsiitixkitytyinnyyyhcfkinkkk--- ---SPSSXAASXSPSSXAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSS SASSSSASXAATTAATTIATTAATTTATTTATT Frame B: tq*kqgiiikysynlllxvklrihiiiiiiivfknkINNKKK--- ---lhlhxlqaxlhlhxlqalphlhlhhqalphlhlhhqalphlhlhhqallhlhlhhlh lhhlhlhhxqqlqlqlqlqlqlqlqlqlqpqp Frame C: lsnnnnknnnnnkelsnnniaiiynyyxnyvyiyklllslflkink*iikkk--- ---sifxccklfsifxccklfpificiiklfpificiiklcpificiiklcsificiifi ciificixcsnyscnyncnyscnyncnynrnh
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/ 214 9e-55 SLH738 (SLH738Q) /CSM/SL/SLH7-B/SLH738Q.Seq.d/ 214 9e-55 SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/ 214 9e-55 SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/ 214 9e-55 SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/ 214 9e-55 SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/ 214 9e-55 SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/ 214 9e-55 SLF396 (SLF396Q) /CSM/SL/SLF3-D/SLF396Q.Seq.d/ 214 9e-55 SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/ 214 9e-55 SLE435 (SLE435Q) /CSM/SL/SLE4-B/SLE435Q.Seq.d/ 214 9e-55
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X16491\|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 214 4e-87 4 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 214 4e-83 4 AC116551\|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 68 1e-07 1 AC122076\|AC122076.4 Rattus norvegicus clone CH230-277E22, * SEQUENCING IN PROGRESS , 3 unordered pieces. 62 8e-06 1 Y17350\|Y17350.1 Laminaria digitata simple tandem repeat DNA, Ld2-167. 60 3e-05 1 AC112599\|AC112599.4 Rattus norvegicus clone CH230-112A20, SEQUENCING IN PROGRESS , 1 ordered piece. 60 3e-05 1 AC114565\|AC114565.6 Mus musculus chromosome 9 clone RP23-118I16 map 9, SEQUENCING IN PROGRESS , 8 ordered pieces. 60 3e-05 1 AL672127\|AL672127.9 Mouse DNA sequence from clone RP23-370O18 on chromosome X. 60 3e-05 1 AC136541\|AC136541.1 Rattus norvegicus clone CH230-287A11, SEQUENCING IN PROGRESS *, 55 unordered pieces. 60 3e-05 1 AC102934\|AC102934.2 Mus musculus clone RP24-209C11, WORKING DRAFT SEQUENCE, 23 unordered pieces. 58 1e-04 1
dna update	2004. 9.26
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3039690 Number of Hits to DB: 96,130,461
protein update	2009. 3.31
PSORT	psg: 0.75 gvh: 0.57 alm: 0.48 top: 0.53 tms: 0.00 mit: 1.08 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 76.0 %: mitochondrial 12.0 %: nuclear 8.0 %: cytoplasmic 4.0 %: cytoskeletal >> prediction for CHF107 is mit
5' end seq. ID	CHF107F
5' end seq.	>CHF107F.Seq AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA ATATAGCTATAATCTATAATTACTATANGTAAAATTACGTATACATATATAAATAATTAT TATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq.	177
3' end seq. ID	CHF107Z
3' end seq.	>CHF107Z.Seq NNNNNNNNNNTCTCCATCTTCATNTGCTGCAAGCTNTTCTCCATCTTCATNTGCTGCAAG CTCTTCCCCATCTTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAG CTCTGCCCCATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTC ATCTGCATCATCTTCATCTGCATCATNTGCAGCAACTACAGCTGCAACTACAATTGCAAC TACAGCTGCAACTACAACTGCAACTACAACCGCAACCACA
Length of 3' end seq.	280
Connected seq. ID	CHF107P
Connected seq.	>CHF107P.Seq AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA ATATAGCTATAATCTATAATTACTATANGTAAAATTACGTATACATATATAAATAATTAT TATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----------TCT CCATCTTCATNTGCTGCAAGCTNTTCTCCATCTTCATNTGCTGCAAGCTCTTCCCCATCT TCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCT TCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCT TCATCTGCATCATNTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACT ACAACTGCAACTACAACCGCAACCACA
Length of connected seq.	437
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas