CHF105
Library CH
(Link to library)
Clone ID CHF105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1|Contig-U16470-1
Original site URL
Representative seq. ID CHF105P
(Link to Original site)
Representative DNA sequence
>CHF105 (CHF105Q) /CSM/CH/CHF1-A/CHF105Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGACAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGXXXXXXXXXXAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAA
AGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGA
TGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGG
TAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACA
AGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAA
TCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTAT
TACTCTTCAATTAAGATCCGTCGAAAGGAGATTAGAAGATCAAAATATGTCTTTAAAGAT
TTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAG
ACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGG
TGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTT
GATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAA
ACTA
sequence update 2002.10.25
Translated Amino Acid sequence
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---RRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQY
ILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQ
LRSVERRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKL
KENQGVVVKKKIIISTLIL*i*nnnnnvqllqpknkkl


Translated Amino Acid sequence (All Frames)
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknlltk
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
qpk---

---RRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQY
ILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQ
LRSVERRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKL
KENQGVVVKKKIIISTLIL*i*nnnnnvqllqpknkkl

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy*qn
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
nq---

---edhtv*yclmklkklinkfgmfsykywmkvvlpmvkvep*isqmllsl*pqi*vvnt
slvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*lsllh*vkktfivlllfn
*dpskgd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtlkrilslnlvnsslvvn*
kkikvllsrkrsssql*yyrfktttttssfsnqktkn

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---ktiqcsiv**s*kssstslecsltsig*rssyrwsr*nrrflkccyhydlkfr*sih
pw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ynclysie*rkps*yyyssi
kirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*keych*t**thpww*ik
rksrcccqekdhhlnfdiidlkqqqqrpasptkkqkt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHF105 (CHF105Q) /CSM/CH/CHF1-A/CHF105Q.Seq.d/ 2004 0.0
SHH494 (SHH494Q) /CSM/SH/SHH4-D/SHH494Q.Seq.d/ 1974 0.0
SHL871 (SHL871Q) /CSM/SH/SHL8-C/SHL871Q.Seq.d/ 1239 0.0
SHL735 (SHL735Q) /CSM/SH/SHL7-B/SHL735Q.Seq.d/ 1239 0.0
SHL249 (SHL249Q) /CSM/SH/SHL2-C/SHL249Q.Seq.d/ 1239 0.0
SHK740 (SHK740Q) /CSM/SH/SHK7-B/SHK740Q.Seq.d/ 1239 0.0
SHK581 (SHK581Q) /CSM/SH/SHK5-D/SHK581Q.Seq.d/ 1239 0.0
SHK453 (SHK453Q) /CSM/SH/SHK4-C/SHK453Q.Seq.d/ 1239 0.0
SHJ671 (SHJ671Q) /CSM/SH/SHJ6-C/SHJ671Q.Seq.d/ 1239 0.0
SHG894 (SHG894Q) /CSM/SH/SHG8-D/SHG894Q.Seq.d/ 1239 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21B24, mRNA sequence. 80 8e-13 2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 3e-08 25
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 34 7e-08 19
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 42 2e-07 15
BH156349|BH156349.1 ENTRL93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 2e-07 2
AZ550505|AZ550505.1 ENTFG67TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 4e-07 1
AZ539884|AZ539884.1 ENTFW90TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 4e-07 1
AZ675591|AZ675591.1 ENTHF21TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 4e-07 1
BH137018|BH137018.1 ENTOU28TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 4e-07 1
BH163033|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 4e-07 1
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par... 208 3e-52
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote... 207 6e-52
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par... 206 1e-51
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei... 206 2e-51
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM... 206 2e-51
(Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 206 2e-51
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par... 205 2e-51
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ... 204 4e-51
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote... 204 4e-51
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)... 203 1e-50
protein update 2009. 3.31
PSORT

psg: 0.63 gvh: 0.36 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHF105 is cyt

5' end seq. ID CHF105F
5' end seq.
>CHF105F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGACAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGNNNNNNNNNN
Length of 5' end seq. 559
3' end seq. ID CHF105Z
3' end seq.
>CHF105Z.Seq
NNNNNNNNNNAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCA
ACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGG
TAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATA
CATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAA
AGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGA
TGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCA
ATTAAGATCCGTCGAAAGGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGA
TGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAA
ACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATT
AAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTTGATATTATA
GATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTA
Length of 3' end seq. 655
Connected seq. ID CHF105P
Connected seq.
>CHF105P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGACAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAG----------AGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAA
AGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGA
TGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGG
TAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACA
AGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAA
TCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTAT
TACTCTTCAATTAAGATCCGTCGAAAGGAGATTAGAAGATCAAAATATGTCTTTAAAGAT
TTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAG
ACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGG
TGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTT
GATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAA
ACTA
Length of connected seq. 1194
Full length Seq ID -
Full length Seq. -
Length of full length seq. -