NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHF102
Library CH
(Link to library)
Clone ID CHF102
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHF102P
(Link to Original site)
Representative DNA sequence 
>CHF102 (CHF102Q) /CSM/CH/CHF1-A/CHF102Q.Seq.d/
GGATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAATATA
TATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTATTA
TTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAA
CGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGAT
GAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAG
GGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTA
ACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACC
TATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCT
GATAATTTGGCAGCANATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATT
AAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTG
GGTTATGTTGAGCAAAXXXXXXXXXXCATCTCCAACCTTTGGTAAACAAAATGGTCTTGG
TGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCT
TGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGT
ATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGG
TTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATT
CTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAA
TAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGA
TGCTGGGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATA
AAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
gyfflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQ
RILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGL
TQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSADNLAAXLLVANTFAYNIPLI
KQVGVSSGSSILTVRISVDLGYVEQ---

---SPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQ
QSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLS
TVDNVYVTSFTSSDAGVIILMVVHWYYSKKIK**kn
Translated Amino Acid sequence (All Frames) 
Frame A:
gyfflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQ
RILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGL
TQRTTYEFTFTNPKDYYFETYEKTLACPPGVPCIRPTVSADNLAAXLLVANTFAYNIPLI
KQVGVSSGSSILTVRISVDLGYVEQ---

---hlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqys*smv
nnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlplq*emliqliqiqivmlsy
qllimfmsllllllmlgllf*wlfigiipkk*nnkki

Frame B:
diffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkymin
vfwh*kenvi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*
lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqxif*lqiplpitfh*l
nklvfhqahlylqlelvliwvmlsk---

---isnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhsilnlws
tinsnksncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**cfli
nc**clchffyff*cwgyyfngcslvlfqknkiikk

Frame C:
ifffvy*kiliivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*st
yfgikrkmlfrfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*win
stynl*iyiyqskrlll*nl*kdiglstrctmyssngfs**fgsxsfsckylcl*hsid*
tswcfirliytys*n*c*fglc*a---

---SPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQ
QSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLS
TVDNVYVTSFTSSDAGVIILMVVHWYYSKKIK**kn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        942   0.0
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                        942   0.0
SHL845 (SHL845Q) /CSM/SH/SHL8-B/SHL845Q.Seq.d/                        942   0.0
SHL837 (SHL837Q) /CSM/SH/SHL8-B/SHL837Q.Seq.d/                        942   0.0
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                        942   0.0
SHL805 (SHL805Q) /CSM/SH/SHL8-A/SHL805Q.Seq.d/                        942   0.0
SHL764 (SHL764Q) /CSM/SH/SHL7-C/SHL764Q.Seq.d/                        942   0.0
SHL741 (SHL741Q) /CSM/SH/SHL7-B/SHL741Q.Seq.d/                        942   0.0
SHL696 (SHL696Q) /CSM/SH/SHL6-D/SHL696Q.Seq.d/                        942   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   0.004  23
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    34   0.082  9
AP003359|AP003359.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 2/9.    38   0.13   12
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    30   0.25   12
BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.30   1
AC150654|AC150654.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, *** SEQUENCING IN PROGRESS ***, 11 ordered pieces.    36   0.62   2
AC114012|AC114012.4 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    36   0.63   2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   0.63   2
AP003131|AP003131.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10.    38   0.85   12
AC008446|AC008446.5 Homo sapiens chromosome 5 clone CTC-340A15, complete sequence.    42   1.0    6
dna update 2004. 9.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   1e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    61   7e-08
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   3e-07
AY458641_15(AY458641|pid:none) Uncultured marine bacterium 463 c...    51   8e-05
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    51   8e-05
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    50   1e-04
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    50   1e-04
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei...    50   2e-04
CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,...    49   2e-04
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    49   3e-04
protein update 2009. 3.31
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHF102 is mit
5' end seq. ID CHF102F
5' end seq. 
>CHF102F.Seq
GGATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAATATA
TATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTATTA
TTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAA
CGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGAT
GAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAG
GGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTA
ACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACC
TATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCT
GATAATTTGGCAGCANATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATT
AAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTG
GGTTATGTTGAGCAAANNNNNNNNNN
Length of 5' end seq. 626
3' end seq. ID CHF102Z
3' end seq. 
>CHF102Z.Seq
NNNNNNNNNNCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTG
TATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAAT
GGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGT
CAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAA
GTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCT
TCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTA
TCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATT
TTAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATA
Length of 3' end seq. 472
Connected seq. ID CHF102P
Connected seq. 
>CHF102P.Seq
GGATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAATATA
TATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTATTA
TTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAA
CGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGAT
GAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAG
GGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTA
ACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACC
TATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCT
GATAATTTGGCAGCANATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATT
AAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTG
GGTTATGTTGAGCAAA----------CATCTCCAACCTTTGGTAAACAAAATGGTCTTGG
TGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCT
TGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGT
ATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGG
TTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATT
CTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAA
TAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGA
TGCTGGGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATA
AAAAAATA
Length of connected seq. 1078
Full length Seq ID -
Full length Seq. -
Length of full length seq. -