CHE883
Library CH
(Link to library)
Clone ID CHE883
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10823-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHE883 (CHE883Q) /CSM/CH/CHE8-D/CHE883Q.Seq.d/
AAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATTTTTTTTGTTATTG
TATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATATCCAGGTTATTCAA
CTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAACCTTATTTCAGCAG
GTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACTTTTGAAACTAGTCAAA
TTTTTANAGTTAGAATTACTGACCCAAATAATCAAAGATGGGAAGTCCCACCAACTGTTA
ATCAATTAGTTGGANAAAATCCAGATTCAACTGATTATATAATTGAATTTACAAATAATC
CATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTTAATACAACTCAAC
CAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTANAATTAAGTACAT
CATTCACAGAGAGTAATCCAAATATTTATGGTTTAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAG
PYGNDIEQLNFQLTFETSQIFXVRITDPNNQRWEVPPTVNQLVGXNPDSTDYIIEFTNNP
FGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYG---


Translated Amino Acid sequence (All Frames)
Frame A:
klklkkk*nfclh*lfflllyyfxlldhyqhhyvniqviqlkxlqkqimvmrqhltlfqq
vhmvti*nn*ifn*llklvkflxlelltqiikdgkshqllin*lxkiqiqlii*lnlqii
hlvlqqlvfqlvkfyliqlnqvivhlmv*fiqiiixn*vhhsqrviqifmv---


Frame B:
n*n*kknetfvfinyffcyciilxcwiiisiim*isrlfnsrxyknk*wl*gnt*pyfsr
siw*ryrtikfsinf*n*snfxs*ny*pk*skmgsptnc*siswxksrfn*lyn*iyk*s
iwfcsnsyfnw*sfi*ynstk*lfi*wfnlfkllfxikyiihre*skylwf---


Frame C:
TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATLNLISAG
PYGNDIEQLNFQLTFETSQIFXVRITDPNNQRWEVPPTVNQLVGXNPDSTDYIIEFTNNP
FGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYG---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK458 (SHK458Q) /CSM/SH/SHK4-C/SHK458Q.Seq.d/ 902 0.0
SHK278 (SHK278Q) /CSM/SH/SHK2-D/SHK278Q.Seq.d/ 902 0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/ 902 0.0
CHG731 (CHG731Q) /CSM/CH/CHG7-B/CHG731Q.Seq.d/ 902 0.0
CHE883 (CHE883Q) /CSM/CH/CHE8-D/CHE883Q.Seq.d/ 902 0.0
AHQ547 (AHQ547Q) /CSM/AH/AHQ5-B/AHQ547Q.Seq.d/ 902 0.0
AHN661 (AHN661Q) /CSM/AH/AHN6-C/AHN661Q.Seq.d/ 902 0.0
AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/ 902 0.0
SHJ667 (SHJ667Q) /CSM/SH/SHJ6-C/SHJ667Q.Seq.d/ 900 0.0
SHJ811 (SHJ811Q) /CSM/SH/SHJ8-A/SHJ811Q.Seq.d/ 896 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 42 2e-05 18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 0.002 11
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 38 0.003 8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 0.005 11
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 32 0.006 10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 0.007 18
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5. 34 0.016 11
AC073729|AC073729.1 Mus musculus clone RP23-240L2, WORKING DRAFT SEQUENCE, 61 unordered pieces. 38 0.019 5
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 32 0.021 13
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence. 40 0.026 9
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX294013_13(BX294013|pid:none) Neurospora crassa DNA linkage gro... 85 1e-15
CU640366_6(CU640366|pid:none) Podospora anserina genomic DNA chr... 82 1e-14
BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a... 80 3e-14
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a... 80 3e-14
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:... 80 3e-14
M22616_1(M22616|pid:none) Human sucrase-isomaltase mRNA, partial... 80 3e-14
AM920436_1367(AM920436|pid:none) Penicillium chrysogenum Wiscons... 80 4e-14
AL163814_11(AL163814|pid:none) Arabidopsis thaliana DNA chromoso... 79 5e-14
AF014806_1(AF014806|pid:none) Arabidopsis thaliana alpha-glucosi... 79 5e-14
AY229886_1(AY229886|pid:none) Mus musculus soluble maltase-gluco... 77 3e-13
protein update 2009. 3.31
PSORT

psg: 1.02 gvh: 0.72 alm: 0.52 top: 0.27 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for CHE883 is exc

5' end seq. ID CHE883F
5' end seq.
>CHE883F.Seq
AAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATTTTTTTTGTTATTG
TATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATATCCAGGTTATTCAA
CTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAACCTTATTTCAGCAG
GTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACTTTTGAAACTAGTCAAA
TTTTTANAGTTAGAATTACTGACCCAAATAATCAAAGATGGGAAGTCCCACCAACTGTTA
ATCAATTAGTTGGANAAAATCCAGATTCAACTGATTATATAATTGAATTTACAAATAATC
CATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTTAATACAACTCAAC
CAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTANAATTAAGTACAT
CATTCACAGAGAGTAATCCAAATATTTATGGTTTANNNNNNNNNN
Length of 5' end seq. 525
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -