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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE870
Library CH
(Link to library)
Clone ID CHE870
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHE870P
(Link to Original site)
Representative DNA sequence 
>CHE870 (CHE870Q) /CSM/CH/CHE8-C/CHE870Q.Seq.d/
AAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXX
XXXXXXGNTACTTCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCGCT
CAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGAC
TCGTCTGCCCTTGGTTCAACCTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAGC
TCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCT
CCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCT
TCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCT
TCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCT
TCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACT
ACAACTGCAACTACAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
kifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK--
-

---XTSPCSVAQCPTGYVCVAQNNVAVCLPRPTTTTGSTSDSSALGSTSESSASGSSAVS
SSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAP
SSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATTTATTT
Translated Amino Acid sequence (All Frames) 
Frame A:
kniqlsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk--
-

---XTSPCSVAQCPTGYVCVAQNNVAVCLPRPTTTTGSTSDSSALGSTSESSASGSSAVS
SSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAP
SSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATTTATTT

Frame B:
kifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK--
-

---xlhhvpllnvqlvmfvslkim*lfvcqdlplppvahltrlplvqplkalplvpllfq
alplvllllhlhhhhllqallhlhllqallhlhllqalphlhlhhqalphlhlhhqalph
lhlhhqallhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlqlqlqlq

Frame C:
kystq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk--
-

---yftmfrcsmsnwlclcrsk*csclfaktyhyhr*hi*lvcpwfnl*klclwflccfk
lclwffccfiftiiiccklfsificcklfsificcklfpificiiklfpificiiklcpi
ficiiklcsificiificiificiicsnyscnyncnyscnyncnyn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ657 (SFJ657Q) /CSM/SF/SFJ6-C/SFJ657Q.Seq.d/                        674   0.0
CHP677 (CHP677Q) /CSM/CH/CHP6-D/CHP677Q.Seq.d/                        674   0.0
CHL411 (CHL411Q) /CSM/CH/CHL4-A/CHL411Q.Seq.d/                        674   0.0
CHL207 (CHL207Q) /CSM/CH/CHL2-A/CHL207Q.Seq.d/                        674   0.0
CHG520 (CHG520Q) /CSM/CH/CHG5-A/CHG520Q.Seq.d/                        674   0.0
CHE870 (CHE870Q) /CSM/CH/CHE8-C/CHE870Q.Seq.d/                        674   0.0
AHM521 (AHM521Q) /CSM/AH/AHM5-A/AHM521Q.Seq.d/                        674   0.0
CHQ729 (CHQ729Q) /CSM/CH/CHQ7-B/CHQ729Q.Seq.d/                        670   0.0
CHQ808 (CHQ808Q) /CSM/CH/CHQ8-A/CHQ808Q.Seq.d/                        668   0.0
SLA681 (SLA681Q) /CSM/SL/SLA6-D/SLA681Q.Seq.d/                        666   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   666   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   674   0.0    9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    68   3e-08  5
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    62   1e-05  1
Y17350|Y17350.1 Laminaria digitata simple tandem repeat DNA, Ld2-167.    60   5e-05  1
AL672127|AL672127.9 Mouse DNA sequence from clone RP23-370O18 on chromosome X.    60   5e-05  1
AC112599|AC112599.4 Rattus norvegicus clone CH230-112A20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    60   5e-05  1
AC114565|AC114565.6 Mus musculus chromosome 9 clone RP23-118I16 map 9, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    60   5e-05  1
AC136541|AC136541.1 Rattus norvegicus clone CH230-287A11, *** SEQUENCING IN PROGRESS ***, 55 unordered pieces.    60   5e-05  1
AC102934|AC102934.2 Mus musculus clone RP24-209C11, WORKING DRAFT SEQUENCE, 23 unordered pieces.    58   2e-04  1
dna update 2004. 9.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    63   9e-09
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    59   1e-07
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    34   3.3
Z81540_13(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    33   5.7
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    33   9.7
Z81540_14(Z81540|pid:none) Caenorhabditis elegans Cosmid F46B3, ...    33   9.7
protein update 2008.10.29
PSORT 

 psg: 0.86  gvh: 0.55  alm: 0.44  top: 0.27  tms: 0.00  mit: 0.39  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHE870 is exc
5' end seq. ID CHE870F
5' end seq. 
>CHE870F.Seq
AAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 186
3' end seq. ID CHE870Z
3' end seq. 
>CHE870Z.Seq
NNNNNNNNNNGNTACTTCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGT
CGCTCAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATC
TGACTCGTCTGCCCTTGGTTCAACCTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTC
AAGCTCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTC
TTCTCCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCC
ATCTTCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCC
ATCTTCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATC
ATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGC
AACTACAACTGCAACTACAACC
Length of 3' end seq. 502
Connected seq. ID CHE870P
Connected seq. 
>CHE870P.Seq
AAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----
------GNTACTTCACCATGTTCCGTTGCTCAATGTCCAACTGGTTATGTTTGTGTCGCT
CAAAATAATGTAGCTGTTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGAC
TCGTCTGCCCTTGGTTCAACCTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAGC
TCTGCCTCTGGTTCTTCTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCT
CCATCTTCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCT
TCATCTGCATCATCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCT
TCATCTGCATCATCAAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCT
TCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACT
ACAACTGCAACTACAACC
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -