CHE850 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHE850
Library	CH (Link to library)
Clone ID	CHE850 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11129-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHE8-C/CHE850Q.Seq.d/
Representative seq. ID	CHE850P (Link to Original site)
Representative DNA sequence	>CHE850 (CHE850Q) /CSM/CH/CHE8-C/CHE850Q.Seq.d/ ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGXXXXXXXXXXTGAATCACTCGAGGGTAACATGATTGAAAATCAATATAT TACACTCAAAACCCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGG TAGATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATA TTCTTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGA ATAGATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGG GATTAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTT ATTTTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAA CTGCACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATA CCTATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTC CTCACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTA AAATTTCAAAGACTGGTCTCTCAACTTATGTACTCACAATGAATTCATTGTCTATAAAAT TGAACAAGTCAGAATCAAATACATCTTAAGAGTTTACAAGGAAAAAAAATAAAATAAAAT TTTTA
sequence update	2002.10.25
Translated Amino Acid sequence	IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI EYQCKGWISGFTKCDWKGDSIER--- ---ESLEGNMIENQYITLKTQTHST*rcslnlgrlccqsrtinqylcsrysft* erektfhslgkreitlmaw*vnfridclagikncsticsknwlqiwrylfcl y*iiqllfhiklsnctyvimsftwheietylygrgttsipyksfrygcssqrw sssffwfsstirnfkdwslnlcthnefivykieqvrikyilrvykekknkif
Translated Amino Acid sequence (All Frames)	Frame A: IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI EYQCKGWISGFTKCDWKGDSIER--- ---itrghdksiyytqnpnslhlikivfikpwimlpivkinnlepisvfkiffhl rermkvnvsllgqkiridysygmvvglisyrlsrrdellhhllqklvtdlvkvfilli vlvnhsaivshqvivqlhlcyyvkfhlvtmnnmipiwkrhhihsivqklvwllltkm viilflilmv*yhvkfqrlvsqlmysqihclntsqnqihlkslqgkkiknf Frame B: slliakekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgi invnvhkyhhlqiftgntfvgktnyqlkqlifhlksmiqnqhqrykernirhygklk ivlpitrdqqlktsfniikvmliryhqfiyfilsligckvvqvdvqlvrisiyfsmvs ninvkvgfqvsqnvigkviqlkd--- ---ESLEGNMIENQYITLKTQTHSTrcslnlgrlccqsrtinqylcsrysft* erektfhslgkreitlmaw*vnfridclagikncsticsknwlqiwrylfcl y*iiqllfhiklsnctyvimsftwheietylygrgttsipyksfrygcssqrw sssffwfsstirnfkdwslnlcthnefivykieqvrikyilrvykekknkif Frame C: hc*qkkngnkkyisldickeinmfnlskryrsssywlnkiktlwngcimas fkmmststiiyrfnslgipslgrpiinnnlffikvskisirgtkreifkgimgsr ycrlegtsnkhhsirlcgitssftsyslldvkrssrmsnlefrytfqwyr ismrldfrfhkmlerfnkm--- ---nhsrvtlkinilhskpkltpldkdsvvyktlvdyvansqdkqfrtnicvqdilsle reneserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgiyfadc isksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaaphkdg nhplsdsdglvvplgkisktglstyvltmnslsiklnksesntseftrkknkikfl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHE850 (CHE850Q) /CSM/CH/CHE8-C/CHE850Q.Seq.d/ 2520 0.0 SHK889 (SHK889Q) /CSM/SH/SHK8-D/SHK889Q.Seq.d/ 2450 0.0 AHO201 (AHO201Q) /CSM/AH/AHO2-A/AHO201Q.Seq.d/ 1320 0.0 VHB869 (VHB869Q) /CSM/VH/VHB8-C/VHB869Q.Seq.d/ 1318 0.0 AHN663 (AHN663Q) /CSM/AH/AHN6-C/AHN663Q.Seq.d/ 1314 0.0 AFF340 (AFF340Q) /CSM/AF/AFF3-B/AFF340Q.Seq.d/ 1312 0.0 SHF852 (SHF852Q) /CSM/SH/SHF8-C/SHF852Q.Seq.d/ 1310 0.0 VHD227 (VHD227Q) /CSM/VH/VHD2-B/VHD227Q.Seq.d/ 1308 0.0 SHJ664 (SHJ664Q) /CSM/SH/SHJ6-C/SHJ664Q.Seq.d/ 1308 0.0 CHG489 (CHG489Q) /CSM/CH/CHG4-D/CHG489Q.Seq.d/ 1308 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AJ534948\|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1207 0.0 3 AJ520099\|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 62 2e-14 3 CQ870481\|CQ870481.1 Sequence 902 from Patent WO2004074320. 36 0.007 13 AE017338\|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of... 34 0.012 15 AC142355\|AC142355.1 Pan troglodytes chromosome 7 clone RP43-22I16, complete sequence. 32 0.025 11 AC139644\|AC139644.1 Rattus norvegicus clone CH230-401P15, WORKING DRAFT SEQUENCE, 30 unordered pieces. 40 0.065 5 AC106674\|AC106674.4 Rattus norvegicus clone CH230-108D18, * SEQUENCING IN PROGRESS , 4 unordered pieces. 38 0.075 11 BX927159\|BX927159.5 Zebrafish DNA sequence SEQUENCING IN PROGRESS * from clone. 38 0.085 9 AC025807\|AC025807.2 Homo sapiens clone RP11-657G2, WORKING DRAFT SEQUENCE, 15 unordered pieces. 50 0.094 1 AC107307\|AC107307.3 Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 50 0.094 1
dna update	2004. 9.26
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 165 1e-41 X65497_1(X65497\|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 165 1e-41 (P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 165 2e-41 PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 165 2e-41 AK303340_1(AK303340\|pid:none) Homo sapiens cDNA FLJ53442 complet... 163 4e-41 (Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 163 5e-41 AK312339_1(AK312339\|pid:none) Homo sapiens cDNA, FLJ92658, highl... 162 6e-41 J03473_1(J03473\|pid:none) Human poly(ADP-ribose) synthetase mRNA... 162 6e-41 AB384394_1(AB384394\|pid:none) Synthetic construct DNA, clone: pF... 162 6e-41 M18112_1(M18112\|pid:none) Human poly(ADP-ribose) polymerase mRNA... 162 6e-41
protein update	2009. 3.31
PSORT	psg: 0.69 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 28.0 %: mitochondrial 20.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for CHE850 is nuc
5' end seq. ID	CHE850F
5' end seq.	>CHE850F.Seq ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGNNNNNNNNNN
Length of 5' end seq.	621
3' end seq. ID	CHE850Z
3' end seq.	>CHE850Z.Seq NNNNNNNNNNTGAATCACTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAA CCCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTT GCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTT GAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTC TTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATT GCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGAT TGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATG TTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAA GAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGAT GGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAG ACTGGTCTCTCAACTTATGTACTCACAATGAATTCATTGTCTATAAAATTGAACAAGTCA GAATCAAATACATCTTAAGAGTTTACAAGGAAAAAAAATAAAATAAAATTTTTA
Length of 3' end seq.	714
Connected seq. ID	CHE850P
Connected seq.	>CHE850P.Seq ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATG----------TGAATCACTCGAGGGTAACATGATTGAAAATCAATATAT TACACTCAAAACCCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGG TAGATTATGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATA TTCTTTCACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGA ATAGATTACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGG GATTAAGAATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTT ATTTTGCTGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAA CTGCACTTATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATA CCTATATGGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTC CTCACAAAGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTA AAATTTCAAAGACTGGTCTCTCAACTTATGTACTCACAATGAATTCATTGTCTATAAAAT TGAACAAGTCAGAATCAAATACATCTTAAGAGTTTACAAGGAAAAAAAATAAAATAAAAT TTTTA
Length of connected seq.	1315
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas