CHE845
Library CH
(Link to library)
Clone ID CHE845
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11704-1
Original site URL
Representative seq. ID CHE845P
(Link to Original site)
Representative DNA sequence
>CHE845 (CHE845Q) /CSM/CH/CHE8-B/CHE845Q.Seq.d/
AAAATTTTTTTTTAATTTTTTTTTAAATTTTTTTTTCAGTTTTTTTATTAATTAATATAT
TAAAACAATNGGTTGTACGATCGATCCCTTTTATTTCATTTTTTTTTTTNGAAAAAAAAA
AAAAAAANTAAAANNAATTNAAAAAAAAAAAAAANAAAAATTNAAAAAAAAAAAAAAAAA
AAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAAXXXXXX
XXXXTGGAATCANCCATCGAAAAAACAACCACCACCTTCAATTATAAAGAAACCAATAAC
AGAAATTGATAGTATAACGAAACAATTATTAAAATCAAATGCTGGTATCACTAGCTCAAC
AGGTGGTGGTGGTGAAGAGGATACATTAACATCATCAAATACGACAACACCAACATTAAC
ATCGATGCAATTATATCAAGCAGCAGCAGAAGAAGATGAAGAATATGTACCTGAACCACT
TAGGGAGACTGAGGATGAAGAAATAATGACAATGTTTTATATGGTACCCGATTCAAATTA
TCATTCATTACAACAAGTTAATTGGGAGGATAATATCATTTGGGATGAGGAAAGTTTAAT
TAAATTTAAAAAGTCTGATCATTTCAATCAATTTTATTTATCATCAGATAATCAACAACA
AAATATTATAATTAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence
kiff*fffkfffqffy*liy*NNXLYDRSLLFHFFFXKKKKKXKXNXKKKKXKIXKKKKK
KKXKKKKKKKKKKILKKK---

---WNXPSKKQPPPSIIKKPITEIDSITKQLLKSNAGITSSTGGGGEEDTLTSSNTTTPT
LTSMQLYQAAAEEDEEYVPEPLRETEDEEIMTMFYMVPDSNYHSLQQVNWEDNIIWDEES
LIKFKKSDHFNQFYLSSDNQQQNIIIK


Translated Amino Acid sequence (All Frames)
Frame A:
kiff*fffkfffqffy*liy*NNXLYDRSLLFHFFFXKKKKKXKXNXKKKKXKIXKKKKK
KKXKKKKKKKKKKILKKK---

---WNXPSKKQPPPSIIKKPITEIDSITKQLLKSNAGITSSTGGGGEEDTLTSSNTTTPT
LTSMQLYQAAAEEDEEYVPEPLRETEDEEIMTMFYMVPDSNYHSLQQVNWEDNIIWDEES
LIKFKKSDHFNQFYLSSDNQQQNIIIK

Frame B:
kfffnfflnfffsffin*yiktxgctidpfyfifffxkkkkkxkxixkkkkxkxkkkkkk
kkxkkkkkkkkkkf*kk---

---gixhrknnhhlql*rnq*qkliv*rnny*nqmlvslaqqvvvvkrih*hhqirqhqh
*hrcnyikqqqkkmknmylnhlgrlrmkk**qcfiwypiqiiihynkligriisfgmrkv
*lnlksliisinfiyhqiinnkil*lk

Frame C:
nffliff*iffsvfllinilkqxvvrsipfisfffxekkkkx*xxxkkkkxknxkkkkkk
kxkkkkkkkkkknfkkk---

---esxiekttttfnyketnnrn**ynetiikikcwyh*lnrwww*rgyiniikydntni
nidaiissssrrr*rict*tt*gd*g*rnndnvlygtrfklsfitts*lgg*yhlg*gkf
n*i*kv*sfqsilfiir*sttkyyn*r

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE845 (CHE845Q) /CSM/CH/CHE8-B/CHE845Q.Seq.d/ 854 0.0
SSG407 (SSG407Q) /CSM/SS/SSG4-A/SSG407Q.Seq.d/ 42 0.011
VHB778 (VHB778Q) /CSM/VH/VHB7-D/VHB778Q.Seq.d/ 40 0.043
VFI482 (VFI482Q) /CSM/VF/VFI4-D/VFI482Q.Seq.d/ 40 0.043
SLC633 (SLC633Q) /CSM/SL/SLC6-B/SLC633Q.Seq.d/ 40 0.043
SLC554 (SLC554Q) /CSM/SL/SLC5-C/SLC554Q.Seq.d/ 40 0.043
CHI116 (CHI116Q) /CSM/CH/CHI1-A/CHI116Q.Seq.d/ 40 0.043
AFN425 (AFN425Q) /CSM/AF/AFN4-B/AFN425Q.Seq.d/ 40 0.043
AFI512 (AFI512Q) /CSM/AF/AFI5-A/AFI512Q.Seq.d/ 40 0.043
AFC801 (AFC801Q) /CSM/AF/AFC8-A/AFC801Q.Seq.d/ 40 0.043

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 6e-06 11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 6e-06 12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 9e-06 16
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 2e-05 11
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 4e-05 13
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 34 4e-04 14
AP004830|AP004830.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 9/10. 36 6e-04 8
AL096782|AL096782.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P8. 36 0.001 7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.001 17
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 34 0.001 11
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM992689_901(FM992689|pid:none) Candida dubliniensis CD36 chromo... 37 0.39
AL663007_15(AL663007|pid:none) Oryza sativa genomic DNA, chromos... 34 3.3
BC116182_1(BC116182|pid:none) Homo sapiens TAF1-like RNA polymer... 33 9.6
(Q8IZX4) RecName: Full=Transcription initiation factor TFIID 210... 33 9.6

protein update 2009. 3.31
PSORT

psg: 0.94 gvh: 0.29 alm: 0.56 top: 0.90 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 1.62 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHE845 is nuc

5' end seq. ID CHE845F
5' end seq.
>CHE845F.Seq
AAAATTTTTTTTTAATTTTTTTTTAAATTTTTTTTTCAGTTTTTTTATTAATTAATATAT
TAAAACAATNGGTTGTACGATCGATCCCTTTTATTTCATTTTTTTTTTTNGAAAAAAAAA
AAAAAAANTAAAANNAATTNAAAAAAAAAAAAAANAAAAATTNAAAAAAAAAAAAAAAAA
AAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAANNNNNN
NNNN
Length of 5' end seq. 244
3' end seq. ID CHE845Z
3' end seq.
>CHE845Z.Seq
NNNNNNNNNNTGGAATCANCCATCGAAAAAACAACCACCACCTTCAATTATAAAGAAACC
AATAACAGAAATTGATAGTATAACGAAACAATTATTAAAATCAAATGCTGGTATCACTAG
CTCAACAGGTGGTGGTGGTGAAGAGGATACATTAACATCATCAAATACGACAACACCAAC
ATTAACATCGATGCAATTATATCAAGCAGCAGCAGAAGAAGATGAAGAATATGTACCTGA
ACCACTTAGGGAGACTGAGGATGAAGAAATAATGACAATGTTTTATATGGTACCCGATTC
AAATTATCATTCATTACAACAAGTTAATTGGGAGGATAATATCATTTGGGATGAGGAAAG
TTTAATTAAATTTAAAAAGTCTGATCATTTCAATCAATTTTATTTATCATCAGATAATCA
ACAACAAAATATTATAATTAAAGA
Length of 3' end seq. 444
Connected seq. ID CHE845P
Connected seq.
>CHE845P.Seq
AAAATTTTTTTTTAATTTTTTTTTAAATTTTTTTTTCAGTTTTTTTATTAATTAATATAT
TAAAACAATNGGTTGTACGATCGATCCCTTTTATTTCATTTTTTTTTTTNGAAAAAAAAA
AAAAAAANTAAAANNAATTNAAAAAAAAAAAAAANAAAAATTNAAAAAAAAAAAAAAAAA
AAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAAAAA------
----TGGAATCANCCATCGAAAAAACAACCACCACCTTCAATTATAAAGAAACCAATAAC
AGAAATTGATAGTATAACGAAACAATTATTAAAATCAAATGCTGGTATCACTAGCTCAAC
AGGTGGTGGTGGTGAAGAGGATACATTAACATCATCAAATACGACAACACCAACATTAAC
ATCGATGCAATTATATCAAGCAGCAGCAGAAGAAGATGAAGAATATGTACCTGAACCACT
TAGGGAGACTGAGGATGAAGAAATAATGACAATGTTTTATATGGTACCCGATTCAAATTA
TCATTCATTACAACAAGTTAATTGGGAGGATAATATCATTTGGGATGAGGAAAGTTTAAT
TAAATTTAAAAAGTCTGATCATTTCAATCAATTTTATTTATCATCAGATAATCAACAACA
AAATATTATAATTAAAGA
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -