CHE836
Library CH
(Link to library)
Clone ID CHE836
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10794-1
Original site URL
Representative seq. ID CHE836P
(Link to Original site)
Representative DNA sequence
>CHE836 (CHE836Q) /CSM/CH/CHE8-B/CHE836Q.Seq.d/
ATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATT
TTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAACTATTCTCTTTAAACTCTT
ATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANG
GTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAAAAT
ATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAA
AGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCA
NATNAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATG
CCAAAAGAXXXXXXXXXXTCTACATGAAATCTGAACCCATTATCGTCAGACCTAACTGAT
GATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTC
TATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAA
TATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATT
AAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAG
AAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCGATTCAT
AGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCA
GCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGT
ATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGT
CGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGT
CTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGAT
CATTGGAGTTCAATTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAA
TTAGAAAGAGAAAAGGTTTAAATCCAAAATTACCAACT
sequence update 2002.10.25
Translated Amino Acid sequence
isiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKKX
VNFTIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRP
XXQLRGITIKSSSVSLHFEMPK---

---YMKSEPIIVRPN**y**wfggf*src*kscqlsl**tflg*e*cs*hlviwsri*gs
kcfs*qnqrcsiss*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcds*r*w
siysnnsscnvclptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywy
siiqyqslsscngiiwshc*ftfkycwssfpsmcf*slefnwyrgqdkrstevassirkr
kglnpklpt


Translated Amino Acid sequence (All Frames)
Frame A:
isiiniitytkqn**nlnfifplhwpnfnlplynysl*tliikihfknshf*kn*NKKKX
VNFTIXQIRSIMDRRENIKNMSVIAHVDHGKTTLTDSLIQRAGIIAXKVSGNAGYMSCRP
XXQLRGITIKSSSVSLHFEMPK---

---st*nlnplssdltddidnglvafnqdvksranylydkhswdkndavniwsfgpeykg
pnvlvnktkgvqylheikdsmvsafqwisnegvlcgekmrsirfnvydvmlhadaihrgs
gqfipttrrvmyasqlsaqptllepmylvdistpesgisgiysvlnrrrgvvigeerrig
tplfnikaylpvmesfgltadlrsstagqafpqcvfdhwssigivvkikdqlk*lhqler
ekv*iqnyq

Frame B:
yq**illhiqnkinkt*tlffpyigqtliclcttilfkllllkfilktliskktktkkkx
silqxikfvqlwivxkiskicllllmlimvkllllih*fkelvllxirylvmqdichvvx
xnnyvvlp*shhlfhftlkcqk---

---lhei*thyrqt*lmilimvwwllikmlkvvpiisminilgirmmqltfghlvqnirv
qmf*ltkpkvfnifmklktlwfqhsngsqmkvyyvvrk*drfvstfmm*cfmpmrfievv
vnlfqqlvv*cmppnyqlnqhfwnqciwlilvllkvvlvvstlysiveevlslvknvvlv
lhysisklifl*wnhlvslliyvqvllvklslnvfliigvqlvswsr*kin*ssfin*ke
krfkskitn

Frame C:
innkyyyiyktkliklklyfsptlakl*fafvqlfslnsyy*nsf*klsflkklkqkkxg
qfynxsnsfnygssxkyqkyvcycsc*sw*nysy*finskswyycx*giw*criyvmssx
xtitwyyhkviicftsl*nakr---

---YMKSEPIIVRPN**y**wfggf*src*kscqlsl**tflg*e*cs*hlviwsri*gs
kcfs*qnqrcsiss*n*rlygfsipmdlk*rcimw*eneidsfqrl*cnascrcds*r*w
siysnnsscnvclptisstntfgtnvfg*y*ys*kwy*wyllctqs*krcchw*rtsywy
siiqyqslsscngiiwshc*ftfkycwssfpsmcf*slefnwyrgqdkrstevassirkr
kglnpklpt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE836 (CHE836Q) /CSM/CH/CHE8-B/CHE836Q.Seq.d/ 1891 0.0
VHK348 (VHK348Q) /CSM/VH/VHK3-B/VHK348Q.Seq.d/ 1853 0.0
AHM711 (AHM711Q) /CSM/AH/AHM7-A/AHM711Q.Seq.d/ 1850 0.0
VHC477 (VHC477Q) /CSM/VH/VHC4-D/VHC477Q.Seq.d/ 1842 0.0
VHD689 (VHD689Q) /CSM/VH/VHD6-D/VHD689Q.Seq.d/ 1459 0.0
AHC347 (AHC347Q) /CSM/AH/AHC3-B/AHC347Q.Seq.d/ 1445 0.0
VHP840 (VHP840Q) /CSM/VH/VHP8-B/VHP840Q.Seq.d/ 1443 0.0
VHN741 (VHN741Q) /CSM/VH/VHN7-B/VHN741Q.Seq.d/ 1443 0.0
VHN538 (VHN538Q) /CSM/VH/VHN5-B/VHN538Q.Seq.d/ 1443 0.0
AHC445 (AHC445Q) /CSM/AH/AHC4-B/AHC445Q.Seq.d/ 1437 0.0

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 137 6e-90 9
X15386|X15386.1 Dictyostelium discoideum H6 gene mRNA. 244 1e-70 3
BI863585|BI863585.1 kx46a06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 2e-21 4
BI863575|BI863575.1 kx45h07.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence. 66 3e-18 3
BI451383|BI451383.1 kx23e09.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 66 3e-18 3
BM056853|BM056853.1 2154-85 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2154-85, mRNA sequence. 92 2e-14 1
BM058578|BM058578.1 2193-94 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-94, mRNA sequence. 90 1e-13 1
BM058379|BM058379.1 2191-29 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2191-29, mRNA sequence. 90 1e-13 1
X92797|X92797.1 E.histolytica partial mRNA; expressed sequence tag (clone HMZP0097). 46 2e-12 4
AZ931993|AZ931993.1 474.dhz93a01.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz93a01.s1, DNA sequence. 82 2e-11 1
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 267 4e-70
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 264 3e-69
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 264 5e-69
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 264 5e-69
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 262 9e-69
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 262 9e-69
AK159514_1(AK159514|pid:none) Mus musculus osteoclast-like cell ... 262 9e-69
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 262 9e-69
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 262 9e-69
AJ278147_1(AJ278147|pid:none) Rattus norvegicus partial Ef-2 gen... 262 9e-69
protein update 2009. 3.31
PSORT

psg: 0.80 gvh: 0.43 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for CHE836 is cyt

5' end seq. ID CHE836F
5' end seq.
>CHE836F.Seq
ATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATT
TTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAACTATTCTCTTTAAACTCTT
ATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANG
GTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAAAAT
ATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAA
AGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCA
NATNAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATG
CCAAAAGANNNNNNNNNN
Length of 5' end seq. 438
3' end seq. ID CHE836Z
3' end seq.
>CHE836Z.Seq
NNNNNNNNNNTCTACATGAAATCTGAACCCATTATCGTCAGACCTAACTGATGATATTGA
TAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTCTATGATAA
ACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAATATAAGGG
TCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATTAAAGACTC
TATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAGAAAATGAG
ATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCGATTCATAGAGGTAG
TGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCAGCTCAACC
AACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGTATTAGTGG
TATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGTCGTATTGG
TACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGTCTCACTGC
TGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGATCATTGGAG
TTCAATTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAATTAGAAAG
AGAAAAGGTTTAAATCCAAAATTACCAACT
Length of 3' end seq. 750
Connected seq. ID CHE836P
Connected seq.
>CHE836P.Seq
ATATCAATAATAAATATTATTACATATACAAAACAAAATTAATAAAACTTAAACTTTATT
TTTCCCCTACATTGGCCAAACTTTAATTTGCCTTTGTACAACTATTCTCTTTAAACTCTT
ATTATTAAAATTCATTTTAAAAACTCTCATTTCTAAAAAAACTAAAACAAAAAAAAAANG
GTCAATTTTACAATANATCAAATTCGTTCAATTATGGATCGTCGNGAAAATATCAAAAAT
ATGTCTGTTATTGCTCATGTTGATCATGGTAAAACTACTCTTACTGATTCATTAATTCAA
AGAGCTGGTATTATTGCANATAAGGTATCTGGTAATGCAGGATATATGTCATGTCGTCCA
NATNAACAATTACGTGGTATTACCATAAAGTCATCATCTGTTTCACTTCACTTTGAAATG
CCAAAAGA----------TCTACATGAAATCTGAACCCATTATCGTCAGACCTAACTGAT
GATATTGATAATGGTTTGGTGGCTTTTAATCAAGATGTTAAAAGTCGTGCCAATTATCTC
TATGATAAACATTCTTGGGATAAGAATGATGCAGTTAACATTTGGTCATTTGGTCCAGAA
TATAAGGGTCCAAATGTTTTAGTTAACAAAACCAAAGGTGTTCAATATCTTCATGAAATT
AAAGACTCTATGGTTTCAGCATTCCAATGGATCTCAAATGAAGGTGTATTATGTGGTGAG
AAAATGAGATCGATTCGTTTCAACGTTTATGATGTAATGCTTCATGCCGATGCGATTCAT
AGAGGTAGTGGTCAATTTATTCCAACAACTCGTCGTGTAATGTATGCCTCCCAACTATCA
GCTCAACCAACACTTTTGGAACCAATGTATTTGGTTGATATTAGTACTCCTGAAAGTGGT
ATTAGTGGTATCTACTCTGTACTCAATCGTAGAAGAGGTGTTGTCATTGGTGAAGAACGT
CGTATTGGTACTCCATTATTCAATATCAAAGCTTATCTTCCTGTAATGGAATCATTTGGT
CTCACTGCTGATTTACGTTCAAGTACTGCTGGTCAAGCTTTCCCTCAATGTGTTTTTGAT
CATTGGAGTTCAATTGGTATCGTGGTCAAGATAAAAGATCAACTGAAGTAGCTTCATCAA
TTAGAAAGAGAAAAGGTTTAAATCCAAAATTACCAACT
Length of connected seq. 1168
Full length Seq ID -
Full length Seq. -
Length of full length seq. -