CHE829
Library CH
(Link to library)
Clone ID CHE829
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHE829P
(Link to Original site)
Representative DNA sequence
>CHE829 (CHE829Q) /CSM/CH/CHE8-B/CHE829Q.Seq.d/
ATTATTCAATTTTATTTTTAATCATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTA
AAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATA
TTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGT
CATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGG
GCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATANAAATTCA
TCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAA
ATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTA
GGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGT
GAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCXXXXXXXXXXAATGTTGTG
TAAGGGTNCACCATGATGGATGTTTCTTAAAGANGCCCCCACGCCCNANGAATGTATAGT
TGATCNCCNCCGTAAAAAATGTGGGTCAGATNCCCATAGACCGCCACCACCAGAAGTTTG
TTCATTAAGATGCCCACCAANCCATGAATGTANGTTTGATGATCATGGTAAAAAATGTTG
GGTAAAGATTCATTGTGATGAAGTNTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAA
AATTAGACATGATGGTTCCCAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACA
TGAANNATGTAATAANAGATGCCCNCCAGGCCATGAATGTAAAGTTGATCNACATGCAAA
AGAATGATGCGTTGTTGCCCATAGACCACCACCANAATGNTCTTTAAGATGTCCANCAAG
ACATGAATGTAGAGTCANCCACTTNGGTGAAGAATGTTGTGTTANAGNTNACCACGATAA
ATGTTCATTNAGATGTCCNCCAGGCCATGNATGTAAAGTTGATCNACATGGAAAAGAATG
NTGCGTTGTTGCCCATAGACCACCNCCAAAATGANCATTAANATGTCCGNCAAAACATGA
ATGTAGAATCAATCANTTTGGTGAAGAATGCTGTGTTAAAAGTANANATGATTGTTTAA
sequence update 2002.10.25
Translated Amino Acid sequence
iiqfyf*sfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXC
HKSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYXNSSNNQVVEVSNKCFNLDGFIK
ITTPTEYSCSDAKIKECALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSST---

---CCVRVHHDGCFLKXPPRPXNV*lixxvknvgqxpidrhhqkfvh*dahqxmnvxlmi
mvknvg*rfivmkxvi*ivvevlnvkldmmvpnvvsvqkdhthhnmxxvixdaxqamnvk
lixmqkndallpidhhxnxl*dvxqdmnvesxtxvknvvlxxttinvhxdvxqamxvkli
xmeknxallpidhxqnxh*xvrqnmnvesixlvknavlkvxmiv*


Translated Amino Acid sequence (All Frames)
Frame A:
iiqfyf*sfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEXC
HKSSECIVINYTPCCGEQKWACSKGTFDTCTYENSCYXNSSNNQVVEVSNKCFNLDGFIK
ITTPTEYSCSDAKIKECALLGKSCSFQXNSCSNPTSCCPGESICEGLSSGSST---

---nvv*gxtmmdvs*rxphaxxmys*spp*kmwvrxp*tattrslfikmptxp*mxv**
sw*kmlgkdsl**sx*frlw*rf*m*n*t*wfpmlcpfrkttpttt*xm**xmpxrp*m*
s*stckrmmrccp*tttxmxfkmsxkt*m*sxplx*rmlcxxxpr*mfixmsxrpxm*s*
stwkrmxrccp*ttxkmxixmsxkt*m*nqsxw*rmlc*kxx*lf

Frame B:
lfnfifnhsn*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkxnv
inlrnvll*iihhvvvnknglalkvhlilvhmkivvixihpitkllkyqinasilmdllk
lqlqpsilvlmprlknvpy*vnhvvskxtlvqiqlpvaqvnqfvkv*alvvqh---

---mlckgxp*wmflkxaptpxecivdxxrkkcgsdxhrppppevcslrcppxhecxfdd
hgkkcwvkihcdevcdldcgrgfeckirhdgsqccvrserphppqhexcnxrcppgheck
vdxhake*cvvahrpppxxslrcpxrhecrvxhxgeeccvxxxhdkcsxrcppghxckvd
xhgkexcvvahrpppk*xlxcpxkhecrinxfgeeccvksxxdcl

Frame C:
ysilfliiqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rxms
*ifgmycyklytmlw*tkmgll*ryi*ylyi*k*llxkfiq*psc*sik*mlqs*wiy*n
ynsnrvflf*cqd*rmclir*im*fpkxllfksnfllpr*inl*rfklw*fni---

---CCVRVHHDGCFLKXPPRPXNV*lixxvknvgqxpidrhhqkfvh*dahqxmnvxlmi
mvknvg*rfivmkxvi*ivvevlnvkldmmvpnvvsvqkdhthhnmxxvixdaxqamnvk
lixmqkndallpidhhxnxl*dvxqdmnvesxtxvknvvlxxttinvhxdvxqamxvkli
xmeknxallpidhxqnxh*xvrqnmnvesixlvknavlkvxmiv*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE829 (CHE829Q) /CSM/CH/CHE8-B/CHE829Q.Seq.d/ 1949 0.0
CHS232 (CHS232Q) /CSM/CH/CHS2-B/CHS232Q.Seq.d/ 898 0.0
CHF830 (CHF830Q) /CSM/CH/CHF8-B/CHF830Q.Seq.d/ 888 0.0
CHF628 (CHF628Q) /CSM/CH/CHF6-B/CHF628Q.Seq.d/ 888 0.0
AHN813 (AHN813Q) /CSM/AH/AHN8-A/AHN813Q.Seq.d/ 888 0.0
CHQ692 (CHQ692Q) /CSM/CH/CHQ6-D/CHQ692Q.Seq.d/ 886 0.0
CHK245 (CHK245Q) /CSM/CH/CHK2-B/CHK245Q.Seq.d/ 886 0.0
CHJ870 (CHJ870Q) /CSM/CH/CHJ8-C/CHJ870Q.Seq.d/ 886 0.0
CHJ327 (CHJ327Q) /CSM/CH/CHJ3-B/CHJ327Q.Seq.d/ 886 0.0
AHR313 (AHR313Q) /CSM/AH/AHR3-A/AHR313Q.Seq.d/ 886 0.0

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 878 0.0 6
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 878 0.0 7
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 56 0.001 1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 56 0.001 1
AC145220|AC145220.10 Medicago truncatula clone mth2-24j17, WORKING DRAFT SEQUENCE, 3 unordered pieces. 42 0.006 2
CN585252|CN585252.1 USDA-FP_128322 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP070_C11, mRNA sequence. 38 0.20 2
Z97348|Z97348.1 Plasmodium falciparum MAL3P1. 36 0.49 5
AC130807|AC130807.30 Medicago truncatula clone mth2-13o20, complete sequence. 38 0.75 7
AC151598|AC151598.1 Medicago truncatula chromosome 2 clone mte1-49g8, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 0.77 2
AC146784|AC146784.19 Medicago truncatula clone mth2-172c4, WORKING DRAFT SEQUENCE, 2 ordered pieces. 34 0.87 5
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 385 e-108
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 155 2e-36
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 99 2e-19
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 94 7e-18
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 64 1e-08
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 54 1e-05
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 51 9e-05
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 45 0.004
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 44 0.008
AJ416893_1(AJ416893|pid:none) Vaccinia virus A53R gene for tumou... 44 0.008
protein update 2009. 3.31
PSORT

psg: 1.02 gvh: 0.68 alm: 0.50 top: 0.27 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: vacuolar

>> prediction for CHE829 is exc

5' end seq. ID CHE829F
5' end seq.
>CHE829F.Seq
ATTATTCAATTTTATTTTTAATCATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTA
AAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATA
TTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGT
CATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGG
GCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATANAAATTCA
TCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAA
ATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTA
GGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGT
GAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCNNNNNNNNNN
Length of 5' end seq. 531
3' end seq. ID CHE829Z
3' end seq.
>CHE829Z.Seq
NNNNNNNNNNAATGTTGTGTAAGGGTNCACCATGATGGATGTTTCTTAAAGANGCCCCCA
CGCCCNANGAATGTATAGTTGATCNCCNCCGTAAAAAATGTGGGTCAGATNCCCATAGAC
CGCCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAANCCATGAATGTANGTTTGATG
ATCATGGTAAAAAATGTTGGGTAAAGATTCATTGTGATGAAGTNTGTGATTTAGATTGTG
GTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCCCAATGTTGTGTCCGTTCAGAAA
GACCACACCCACCACAACATGAANNATGTAATAANAGATGCCCNCCAGGCCATGAATGTA
AAGTTGATCNACATGCAAAAGAATGATGCGTTGTTGCCCATAGACCACCACCANAATGNT
CTTTAAGATGTCCANCAAGACATGAATGTAGAGTCANCCACTTNGGTGAAGAATGTTGTG
TTANAGNTNACCACGATAAATGTTCATTNAGATGTCCNCCAGGCCATGNATGTAAAGTTG
ATCNACATGGAAAAGAATGNTGCGTTGTTGCCCATAGACCACCNCCAAAATGANCATTAA
NATGTCCGNCAAAACATGAATGTAGAATCAATCANTTTGGTGAAGAATGCTGTGTTAAAA
GTANANATGATTGTTTAA
Length of 3' end seq. 678
Connected seq. ID CHE829P
Connected seq.
>CHE829P.Seq
ATTATTCAATTTTATTTTTAATCATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTA
AAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATA
TTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAANAATGT
CATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGG
GCTTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATANAAATTCA
TCCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAA
ATTACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTA
GGTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGT
GAATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATC----------AATGTTGTG
TAAGGGTNCACCATGATGGATGTTTCTTAAAGANGCCCCCACGCCCNANGAATGTATAGT
TGATCNCCNCCGTAAAAAATGTGGGTCAGATNCCCATAGACCGCCACCACCAGAAGTTTG
TTCATTAAGATGCCCACCAANCCATGAATGTANGTTTGATGATCATGGTAAAAAATGTTG
GGTAAAGATTCATTGTGATGAAGTNTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAA
AATTAGACATGATGGTTCCCAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACA
TGAANNATGTAATAANAGATGCCCNCCAGGCCATGAATGTAAAGTTGATCNACATGCAAA
AGAATGATGCGTTGTTGCCCATAGACCACCACCANAATGNTCTTTAAGATGTCCANCAAG
ACATGAATGTAGAGTCANCCACTTNGGTGAAGAATGTTGTGTTANAGNTNACCACGATAA
ATGTTCATTNAGATGTCCNCCAGGCCATGNATGTAAAGTTGATCNACATGGAAAAGAATG
NTGCGTTGTTGCCCATAGACCACCNCCAAAATGANCATTAANATGTCCGNCAAAACATGA
ATGTAGAATCAATCANTTTGGTGAAGAATGCTGTGTTAAAAGTANANATGATTGTTTAA
Length of connected seq. 1189
Full length Seq ID -
Full length Seq. -
Length of full length seq. -