CHE818
Library CH
(Link to library)
Clone ID CHE818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHE818 (CHE818Q) /CSM/CH/CHE8-A/CHE818Q.Seq.d/
TGGACTTCACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTG
TAGAACATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTA
ATCAGCTTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAG
AATTGATTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATG
CATCAGTTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCA
AAACTCTTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATT
TAGGTACTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCG
CTGATATCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCG
ATACTGTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTG
CTGGTGGTGAATTTACCATTGCTCTCGATCATACCGAACCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
dftfrsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRE
LISNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNL
GTIARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSA
GGEFTIALDHTE---


Translated Amino Acid sequence (All Frames)
Frame A:
wtshlgpif*fiinficffl*nikkwlnhklnvshsklklislcplllilfiqikkyf*e
n*fqmhlmp*ikfvtnh*lmhqfwnqklnsklklfqirlpkllhslivvlv*pkpiw*ri
*vlllvqvlktlwnnykvvplisv*lvnlvlvstllt*lpilllftlktmmmnntfgnqv
lvvnlpllsiipn---


Frame B:
glhi*vlysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkr
idfkci*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkef
ryycsfry*klygtitkwcr*yqydwsiwcwfllcllscrycycsl*kq***tirlgikc
ww*iyhcsrsyrt---


Frame C:
dftfrsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRE
LISNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNL
GTIARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSA
GGEFTIALDHTE---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP152 (VHP152Q) /CSM/VH/VHP1-C/VHP152Q.Seq.d/ 1051 0.0
VHM703 (VHM703Q) /CSM/VH/VHM7-A/VHM703Q.Seq.d/ 1051 0.0
VHK280 (VHK280Q) /CSM/VH/VHK2-D/VHK280Q.Seq.d/ 1051 0.0
VHI607 (VHI607Q) /CSM/VH/VHI6-A/VHI607Q.Seq.d/ 1051 0.0
VHH869 (VHH869Q) /CSM/VH/VHH8-C/VHH869Q.Seq.d/ 1051 0.0
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/ 1041 0.0
VHL421 (VHL421Q) /CSM/VH/VHL4-A/VHL421Q.Seq.d/ 1041 0.0
VHK487 (VHK487Q) /CSM/VH/VHK4-D/VHK487Q.Seq.d/ 1041 0.0
VHJ821 (VHJ821Q) /CSM/VH/VHJ8-A/VHJ821Q.Seq.d/ 1041 0.0
VHH735 (VHH735Q) /CSM/VH/VHH7-B/VHH735Q.Seq.d/ 1041 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds. 1003 0.0 1
AF249998|AF249998.1 Habrotrocha constricta 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds. 88 3e-48 4
AF143854|AF143854.1 Sinantherina socialis 82 kD heat shock protein (hsp82) gene, partial cds. 78 3e-44 4
AF143849|AF143849.1 Adineta vaga 82 kD heat shock protein 1 (hsp82-1) gene, partial cds. 78 5e-44 5
AF143850|AF143850.1 Habrotrocha constricta 82 kD heat shock protein 1 (hsp82-1) gene, partial cds. 88 3e-42 4
AF143858|AF143858.1 Eosphora ehrenbergi 82 kD heat shock protein (hsp82) gene, partial cds. 74 8e-42 4
AA420894|AA420894.1 CpEST.331 uniZAPCpIOWAsporoLib3 Cryptosporidium parvum cDNA 5' similar to hsp86, mRNA sequence. 74 9e-40 6
AA420926|AA420926.1 CpEST.369 uniZAPCpIOWAsporoLib3 Cryptosporidium parvum cDNA 5' similar to heat shock protein 86, mRNA sequence. 74 5e-38 6
AY423866|AY423866.1 Cryptosporidium parvum heat shock protein 90 gene, partial cds. 74 3e-37 6
AF250000|AF250000.1 Adineta vaga 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds. 68 4e-37 5
dna update 2004. 9.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein; 328 6e-89
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1.... 328 6e-89
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f... 260 2e-68
(P04810) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 252 4e-66
AY851367_1(AY851367|pid:none) Liriomyza huidobrensis heat shock ... 252 4e-66
U57467_1(U57467|pid:none) Drosophila melanogaster heat shock pro... 252 4e-66
(P04811) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 252 4e-66
U57459_1(U57459|pid:none) Drosophila melanogaster heat shock pro... 252 4e-66
EU306519_1(EU306519|pid:none) Mythimna separata Hsp90 mRNA, comp... 252 6e-66
(O02192) RecName: Full=Heat shock protein 83; AltName: Full=HSP ... 252 6e-66
protein update 2009. 3.31
PSORT

psg: 0.50 gvh: 0.46 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHE818 is nuc

5' end seq. ID CHE818F
5' end seq.
>CHE818F.Seq
TGGACTTCACATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTG
TAGAACATAAAAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTA
ATCAGCTTATGTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAG
AATTGATTTCAAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATG
CATCAGTTTTGGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCA
AAACTCTTACACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATT
TAGGTACTATTGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCG
CTGATATCAGTATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCG
ATACTGTTATTGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTG
CTGGTGGTGAATTTACCATTGCTCTCGATCATACCGAACCANNNNNNNNNN
Length of 5' end seq. 591
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -