>CHE790 (CHE790Q) /CSM/CH/CHE7-D/CHE790Q.Seq.d/
XXXXXXXXXXAAAAGGAAANGNAGANNNNCAAAGNNNAGGGNNAGNNTTGGGNTGATNAA
TTAGAAAAAGAGNNNCAAGATAAAGNATTGGNTGATAAACTTGCAAAAGAAAAAGAAGAA
AAAGAAAGAAAAGAGAAAGAATTGGCTGATAAATTAGAAAAAGGGAAAAAAGATAAAGAA
TTGGCTGATAAAGTTACAAAAGAAAAAGAAGAAAAAGATAAAAAAGAAAAAGAATTTAAA
TTAAAATTAGAAAAAGAACAAAAAGAAAAAGAATTAAAATTAAAACAAGAAAGAGAATTT
GCAGAAAAAGAAGAAAGAGATCGTTTAGAAAGAGAGAAAATTTCAAAATCTATTGAAAAA
GAAACAAAATCATCCACAATAACTGATCAATTTAAATTATCAATTGAAAAACAACTTCAA
AGTCAATTAGAAAATAAAAAGAAACCAGTACAAGTTACTGAAGATAATAGTAGTAT

---KEXXXXKXXGXXWXDXLEKEXQDKXLXDKLAKEKEEKERKEKELADKLEKGKKDKEL
ADKVTKEKEEKDKKEKEFKLKLEKEQKEKELKLKQEREFAEKEERDRLEREKISKSIEKE
TKSSTITDQFKLSIEKQLQSQLENKKKPVQVTEDNSS

Frame A:
---kgxxxxqxxgxxlg*xirkrxxr*xig**tckrkrrkrkkrerig**irkrekr*ri
g**sykrkrrkr*krkri*ikirkrtkrkrikiktrkricrkrrkrsfrkrenfkiy*kr
nkiihnn*si*iin*kttsksirk*ketstsy*r***y


Frame B:
---KEXXXXKXXGXXWXDXLEKEXQDKXLXDKLAKEKEEKERKEKELADKLEKGKKDKEL
ADKVTKEKEEKDKKEKEFKLKLEKEQKEKELKLKQEREFAEKEERDRLEREKISKSIEKE
TKSSTITDQFKLSIEKQLQSQLENKKKPVQVTEDNSS


Frame C:
---rkxrxxkxrxxxgxxn*kkxxkikxwxinlqkkkkkkkekrknwlin*kkgkkiknw
liklqkkkkkkikkkknln*n*kknkkkkn*n*nkkenlqkkkkeiv*kerkfqnllkkk
qnhpq*linlnyqlknnfkvn*kikrnqykllkiivv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE790 (CHE790Q) /CSM/CH/CHE7-D/CHE790Q.Seq.d/                        270   2e-71
VHE887 (VHE887Q) /CSM/VH/VHE8-D/VHE887Q.Seq.d/                        268   7e-71
SLF402 (SLF402Q) /CSM/SL/SLF4-A/SLF402Q.Seq.d/                        268   7e-71
SHE755 (SHE755Q) /CSM/SH/SHE7-C/SHE755Q.Seq.d/                        268   7e-71
SFC352 (SFC352Q) /CSM/SF/SFC3-C/SFC352Q.Seq.d/                        268   7e-71
CHG656 (CHG656Q) /CSM/CH/CHG6-C/CHG656Q.Seq.d/                        268   7e-71
CFF854 (CFF854Q) /CSM/CF/CFF8-C/CFF854Q.Seq.d/                        268   7e-71
AHQ312 (AHQ312Q) /CSM/AH/AHQ3-A/AHQ312Q.Seq.d/                        268   7e-71
AHD852 (AHD852Q) /CSM/AH/AHD8-C/AHD852Q.Seq.d/                        268   7e-71
AHA304 (AHA304Q) /CSM/AH/AHA3-A/AHA304Q.Seq.d/                        268   7e-71

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   0.021  10
BF295885|BF295885.1 029PbE11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    46   0.045  2
BF294538|BF294538.1 006PbB09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    46   0.049  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.086  9
AC145728|AC145728.7 Zea mays clone ZMMBBc0026A01, *** SEQUENCING IN PROGRESS ***.    36   0.19   5
AC079733|AC079733.1 Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete sequence.    36   0.25   5
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    32   0.58   5
AL391864|AL391864.13 Human DNA sequence from clone RP11-378H16 on chromosome 9.    40   0.74   3
AC149831|AC149831.1 Zea mays clone ZMMBBc0408K22, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   1.1    4
AC117742|AC117742.1 Mus musculus clone RP24-135E8, LOW-PASS SEQUENCE SAMPLING.    34   1.2    4

 ***** No hits found ******

Lambda     K      H
   0.302    0.121    0.316

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 158,422,666

 psg: 0.69  gvh: 0.36  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.22  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHE790 is nuc

>CHE790Z.Seq
NNNNNNNNNNAAAAGGAAANGNAGANNNNCAAAGNNNAGGGNNAGNNTTGGGNTGATNAA
TTAGAAAAAGAGNNNCAAGATAAAGNATTGGNTGATAAACTTGCAAAAGAAAAAGAAGAA
AAAGAAAGAAAAGAGAAAGAATTGGCTGATAAATTAGAAAAAGGGAAAAAAGATAAAGAA
TTGGCTGATAAAGTTACAAAAGAAAAAGAAGAAAAAGATAAAAAAGAAAAAGAATTTAAA
TTAAAATTAGAAAAAGAACAAAAAGAAAAAGAATTAAAATTAAAACAAGAAAGAGAATTT
GCAGAAAAAGAAGAAAGAGATCGTTTAGAAAGAGAGAAAATTTCAAAATCTATTGAAAAA
GAAACAAAATCATCCACAATAACTGATCAATTTAAATTATCAATTGAAAAACAACTTCAA
AGTCAATTAGAAAATAAAAAGAAACCAGTACAAGTTACTGAAGATAATAGTAGTAT