CHE784 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHE784
Library	CH (Link to library)
Clone ID	CHE784 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16298-1\|Contig-U16523-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHE7-D/CHE784Q.Seq.d/
Representative seq. ID	CHE784P (Link to Original site)
Representative DNA sequence	>CHE784 (CHE784Q) /CSM/CH/CHE7-D/CHE784Q.Seq.d/ AACAAATACATAATATTTTCATTAATTAATATTTTAATATTTCCAAATTAAAATGATCCC AAAAAAACAAAAAGGATTCAATGGTGAACCAAAATCTCATCAAGAAATTGATAGAAGTCA ATCACCATTGAAACAAAGAACCAATAATAATAATTATCAACAACAACCACCGCAACAACA ACAAAAACAACAACCACAACAACCACAACAAAAAAAACAACAACAAAAACAACAACAAAA ACAACAACCACAACAACCACAACAACCACAACAACCACAACAACAAAAACAACAACTACA ACAACCACAACAACCACAACAATATTTCCAACCAAGACAAACTCAAAATGCTTGGGGAAA ACAAAATAACAGTATCCCACTTGAAGAACAATTTCAAGAAGTAAAACCAATCACACAACC TCAAACACCTGAAACAACAACAACAACAACAACTACAACAACTACAACAACAAATACAAC AAATACAAATCTATTAGTTCCAAGAATTTCAAGAAGAGATATGGTTAAAGATTCTGACAT TGAAAATGTTGCAATTGTTACAGCAAAATCAAAAACTGTTCAAGGTAAACAAATTTCTTT AATTTCAAATTTCTTTCCAAXXXXXXXXXXGTCTCAATCAACAAATATTCAATGGTGTCA TTCCAAAGAAAACAATGATCATTGGTATCGATGTTGGTCATAACTCTGATATGAGAGGTC ATTCAGTAGTTGGATTCGTTGCAACTATCGATGATAAATTTCAAAAGTATTTCTCAAGAT CTTTTGTTCAAAAGCGTCCTGGTAAAGAAATCATTGATTCTCTTGAAGAAGCAACTAAAG AAGCAATGTCAAAATATTTTAGTTTCAATAATTGTTTACCAGAATTGGTTATAGTTTATC GTGATGGTGTTGGTGATGGTATGTTAGATCTTGTCAATAGATCTGAAATTGCTGCAATGA AAAAAGGTTTTGCTGAAACACCATCTTCTTGGGGTATAAAACCAAAGTTAATGTATGTCA TTGTCAAAAAGAATACAAATGCACGTTTATTTACTGCTGATCCAATTGGTAATCCTCCAG CTGGTACTTTGGTTGACTCAAAAATTACCCATCCAAATTGGTATGATTTCTTTTTAGTCT CTCAAGTAACTAACAATGGTTCTGTCAATCCAACTCATTATCACGTTTTATTGGATGAAC AAAAAATGCCTGCTGATTTATTTCAATTATTTACTTTCCAAATGTGTCATCTTTATTTCA ACTTTGAAAAATCTGTTCGTGTTCCAGCAACTTGTCAATTTGCACACAAAATGGCATTTT TAATTGGTAGAACAGTTTTCGCTGATGCTGCGCCTCAATTATCNNNATAAATTATTCTTC CTTTAAATT
sequence update	2002.10.25
Translated Amino Acid sequence	tntyfhlifYFQIKMIPKKQKGFNGEPKSHQEIDRSQSPLKQRTNNNNYQQQPPQQQ QKQQPQQPQQKKQQQKQQQKQQPQQPQQPQQPQQQKQQLQQPQQPQQYFQPRQTQNAWGK QNNSIPLEEQFQEVKPITQPQTPETTTTTTTTTTTTTNTTNTNLLVPRISRRDMVKDSDI ENVAIVTAKSKTVQGKQISLISNFFP--- ---LNQQIFNGVIPKKTMIIGIDVGHNSDMRGHSVVGFVATIDDKFQKYFSRSFVQKRPG KEIIDSLEEATKEAMSKYFSFNNCLPELVIVYRDGVGDGMLDLVNRSEIAAMKKGFAETP SSWGIKPKLMYVIVKKNTNARLFTADPIGNPPAGTLVDSKITHPNWYDFFLVSQVTNNGS VNPTHYHVLLDEQKMPADLFQLFTFQMCHLYFNFEKSVRVPATCQFAHKMAFLIGRTVFA DAAPQLSXiilpln
Translated Amino Acid sequence (All Frames)	Frame A: nkyiifslinilifpnndpkktkriqwtkissrnksitietknqlsttttatt tkttttttttkktttktttktttttttttttttttktttttttttttifptktnskclgk tkqyptrtisrsktnhttsntnnnnnnnynnynnkynkyksissknfkkrygrfh kccncyskikncsrtnffnfkfls--- ---vsinkysmvsfqrkqslvsmlvitlieviqldslqlsminfksisqdllfksvl vkkslillkkqlkkqcqnilvsiivyqnwlfivmvlvmvcilsidlkllqkkvllkh hllgvnqscmslskriqmhvyllliqlvilqlvlwltqklpiqigmisfslkltmv lsiqliitfywmnkkclliyfnyllskcvifistlknlfvfqqlvnlhtkwhflveqfs lmlrlnyxxklffli Frame B: tntyfhlifYFQIKMIPKKQKGFNGEPKSHQEIDRSQSPLKQRTNNNNYQQQPPQQQ QKQQPQQPQQKKQQQKQQQKQQPQQPQQPQQPQQQKQQLQQPQQPQQYFQPRQTQNAWGK QNNSIPLEEQFQEVKPITQPQTPETTTTTTTTTTTTTNTTNTNLLVPRISRRDMVKDSDI ENVAIVTAKSKTVQGKQISLISNFFP--- ---sqstniqwchskenndhwyrcwslyersfsswircnyriskvflkifcskasw rnhfsrsnrsnvkiffqlftrigyslswcwwyvrscqinccnekrfcnt iflgyktkvnvchcqkeykctfiycsnwssswyfglknypsklvflfslssnqwf cqsnslsrfigtknacfisiiyfpnvsslfqlkicscssnlsictqngifnwnsfr ccasiixinyssfk Frame C: qihnifinyfnisklksqknkkdsmvnqnlikklievnhhnkepiiiiinnnhrnnn knnnhnnhnkknnnknnnknnnhnnhnnhnnhnnknnnynnhnnhnnisnqdklkmlgen kitvshlknnfkknqshnlkhlkqqqqqqlqqlqqqiqqiqiyfqefqeeiwlkiltl kmlqllqqnqklfkvnkflfqisfq--- ---LNQQIFNGVIPKKTMIIGIDVGHNSDMRGHSVVGFVATIDDKFQKYFSRSFVQKRPG KEIIDSLEEATKEAMSKYFSFNNCLPELVIVYRDGVGDGMLDLVNRSEIAAMKKGFAETP SSWGIKPKLMYVIVKKNTNARLFTADPIGNPPAGTLVDSKITHPNWYDFFLVSQVTNNGS VNPTHYHVLLDEQKMPADLFQLFTFQMCHLYFNFEKSVRVPATCQFAHKMAFLIGRTVFA DAAPQLSX*iilpln
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHE784 (CHE784Q) /CSM/CH/CHE7-D/CHE784Q.Seq.d/ 1709 0.0 CHL237 (CHL237Q) /CSM/CH/CHL2-B/CHL237Q.Seq.d/ 1487 0.0 CHF445 (CHF445Q) /CSM/CH/CHF4-B/CHF445Q.Seq.d/ 1487 0.0 SHL722 (SHL722Q) /CSM/SH/SHL7-A/SHL722Q.Seq.d/ 1477 0.0 SHK742 (SHK742Q) /CSM/SH/SHK7-B/SHK742Q.Seq.d/ 1477 0.0 CHL307 (CHL307Q) /CSM/CH/CHL3-A/CHL307Q.Seq.d/ 1477 0.0 AHO381 (AHO381Q) /CSM/AH/AHO3-D/AHO381Q.Seq.d/ 1477 0.0 AHM692 (AHM692Q) /CSM/AH/AHM6-D/AHM692Q.Seq.d/ 1477 0.0 AHL485 (AHL485Q) /CSM/AH/AHL4-D/AHL485Q.Seq.d/ 1477 0.0 AFG638 (AFG638Q) /CSM/AF/AFG6-B/AFG638Q.Seq.d/ 1477 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116924\|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 283 e-161 13 AC115682\|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence. 54 3e-16 8 AE014826\|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 34 5e-06 16 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 32 1e-04 19 AC114263\|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 32 3e-04 14 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 3e-04 13 AC098920\|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 7e-04 6 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 0.001 19 CR382399\|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 30 0.002 18 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 34 0.002 16
dna update	2004. 9.26
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116924_18(AC116924\|pid:none) Dictyostelium discoideum chromoso... 402 e-110 AB455103_1(AB455103\|pid:none) Botryllus primigenus BpPiwi mRNA f... 202 2e-50 EF619343_1(EF619343\|pid:none) Gallus gallus piwi-like 1 (PIWI) m... 202 3e-50 EU413991_1(EU413991\|pid:none) Oryzias latipes piwi-like protein ... 201 4e-50 AY493987_1(AY493987\|pid:none) Podocoryne carnea Cniwi (Cniwi) mR... 196 1e-48 AB372007_1(AB372007\|pid:none) Bombyx mori BmAGO3 mRNA for AGO3, ... 191 5e-47 CT030247_6(CT030247\|pid:none) Mouse DNA sequence from clone RP23... 189 1e-46 AF104260_1(AF104260\|pid:none) Homo sapiens HIWI mRNA, complete c... 189 2e-46 (Q9JMB7) RecName: Full=Piwi-like protein 1; &AB032604_1(AB03260... 189 2e-46 BC028581_1(BC028581\|pid:none) Homo sapiens piwi-like 1 (Drosophi... 189 2e-46
protein update	2009. 3.31
PSORT	psg: 0.54 gvh: 0.01 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: nuclear 24.0 %: cytoplasmic 4.0 %: Golgi 4.0 %: vacuolar 4.0 %: plasma membrane >> prediction for CHE784 is nuc
5' end seq. ID	CHE784F
5' end seq.	>CHE784F.Seq AACAAATACATAATATTTTCATTAATTAATATTTTAATATTTCCAAATTAAAATGATCCC AAAAAAACAAAAAGGATTCAATGGTGAACCAAAATCTCATCAAGAAATTGATAGAAGTCA ATCACCATTGAAACAAAGAACCAATAATAATAATTATCAACAACAACCACCGCAACAACA ACAAAAACAACAACCACAACAACCACAACAAAAAAAACAACAACAAAAACAACAACAAAA ACAACAACCACAACAACCACAACAACCACAACAACCACAACAACAAAAACAACAACTACA ACAACCACAACAACCACAACAATATTTCCAACCAAGACAAACTCAAAATGCTTGGGGAAA ACAAAATAACAGTATCCCACTTGAAGAACAATTTCAAGAAGTAAAACCAATCACACAACC TCAAACACCTGAAACAACAACAACAACAACAACTACAACAACTACAACAACAAATACAAC AAATACAAATCTATTAGTTCCAAGAATTTCAAGAAGAGATATGGTTAAAGATTCTGACAT TGAAAATGTTGCAATTGTTACAGCAAAATCAAAAACTGTTCAAGGTAAACAAATTTCTTT AATTTCAAATTTCTTTCCAANNNNNNNNNN
Length of 5' end seq.	630
3' end seq. ID	CHE784Z
3' end seq.	>CHE784Z.Seq NNNNNNNNNNGTCTCAATCAACAAATATTCAATGGTGTCATTCCAAAGAAAACAATGATC ATTGGTATCGATGTTGGTCATAACTCTGATATGAGAGGTCATTCAGTAGTTGGATTCGTT GCAACTATCGATGATAAATTTCAAAAGTATTTCTCAAGATCTTTTGTTCAAAAGCGTCCT GGTAAAGAAATCATTGATTCTCTTGAAGAAGCAACTAAAGAAGCAATGTCAAAATATTTT AGTTTCAATAATTGTTTACCAGAATTGGTTATAGTTTATCGTGATGGTGTTGGTGATGGT ATGTTAGATCTTGTCAATAGATCTGAAATTGCTGCAATGAAAAAAGGTTTTGCTGAAACA CCATCTTCTTGGGGTATAAAACCAAAGTTAATGTATGTCATTGTCAAAAAGAATACAAAT GCACGTTTATTTACTGCTGATCCAATTGGTAATCCTCCAGCTGGTACTTTGGTTGACTCA AAAATTACCCATCCAAATTGGTATGATTTCTTTTTAGTCTCTCAAGTAACTAACAATGGT TCTGTCAATCCAACTCATTATCACGTTTTATTGGATGAACAAAAAATGCCTGCTGATTTA TTTCAATTATTTACTTTCCAAATGTGTCATCTTTATTTCAACTTTGAAAAATCTGTTCGT GTTCCAGCAACTTGTCAATTTGCACACAAAATGGCATTTTTAATTGGTAGAACAGTTTTC GCTGATGCTGCGCCTCAATTATCNNNATAAATTATTCTTCCTTTAAATT
Length of 3' end seq.	769
Connected seq. ID	CHE784P
Connected seq.	>CHE784P.Seq AACAAATACATAATATTTTCATTAATTAATATTTTAATATTTCCAAATTAAAATGATCCC AAAAAAACAAAAAGGATTCAATGGTGAACCAAAATCTCATCAAGAAATTGATAGAAGTCA ATCACCATTGAAACAAAGAACCAATAATAATAATTATCAACAACAACCACCGCAACAACA ACAAAAACAACAACCACAACAACCACAACAAAAAAAACAACAACAAAAACAACAACAAAA ACAACAACCACAACAACCACAACAACCACAACAACCACAACAACAAAAACAACAACTACA ACAACCACAACAACCACAACAATATTTCCAACCAAGACAAACTCAAAATGCTTGGGGAAA ACAAAATAACAGTATCCCACTTGAAGAACAATTTCAAGAAGTAAAACCAATCACACAACC TCAAACACCTGAAACAACAACAACAACAACAACTACAACAACTACAACAACAAATACAAC AAATACAAATCTATTAGTTCCAAGAATTTCAAGAAGAGATATGGTTAAAGATTCTGACAT TGAAAATGTTGCAATTGTTACAGCAAAATCAAAAACTGTTCAAGGTAAACAAATTTCTTT AATTTCAAATTTCTTTCCAA----------GTCTCAATCAACAAATATTCAATGGTGTCA TTCCAAAGAAAACAATGATCATTGGTATCGATGTTGGTCATAACTCTGATATGAGAGGTC ATTCAGTAGTTGGATTCGTTGCAACTATCGATGATAAATTTCAAAAGTATTTCTCAAGAT CTTTTGTTCAAAAGCGTCCTGGTAAAGAAATCATTGATTCTCTTGAAGAAGCAACTAAAG AAGCAATGTCAAAATATTTTAGTTTCAATAATTGTTTACCAGAATTGGTTATAGTTTATC GTGATGGTGTTGGTGATGGTATGTTAGATCTTGTCAATAGATCTGAAATTGCTGCAATGA AAAAAGGTTTTGCTGAAACACCATCTTCTTGGGGTATAAAACCAAAGTTAATGTATGTCA TTGTCAAAAAGAATACAAATGCACGTTTATTTACTGCTGATCCAATTGGTAATCCTCCAG CTGGTACTTTGGTTGACTCAAAAATTACCCATCCAAATTGGTATGATTTCTTTTTAGTCT CTCAAGTAACTAACAATGGTTCTGTCAATCCAACTCATTATCACGTTTTATTGGATGAAC AAAAAATGCCTGCTGATTTATTTCAATTATTTACTTTCCAAATGTGTCATCTTTATTTCA ACTTTGAAAAATCTGTTCGTGTTCCAGCAACTTGTCAATTTGCACACAAAATGGCATTTT TAATTGGTAGAACAGTTTTCGCTGATGCTGCGCCTCAATTATCNNNATAAATTATTCTTC CTTTAAATT
Length of connected seq.	1379
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas