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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE778
Library CH
(Link to library)
Clone ID CHE778
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHE778P
(Link to Original site)
Representative DNA sequence 
>CHE778 (CHE778Q) /CSM/CH/CHE7-D/CHE778Q.Seq.d/
ACTAACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATG
TAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATG
TATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAA
ATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAG
GTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACAC
GTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAA
CTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCA
ATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGA
GATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAA
CATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGCGTCCACAACACA
TGTTGATGCGTGTCTCXXXXXXXXXXACATTTACAGTCGTCGTGTTTTAGCAGGTGAATT
CACAATTGTCAACAAACAATTACTCGAAGATCTCATGGAATTGGGCATTTGATCACCAGA
GATGAAGAATCAAATCGTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGA
TGATTTGAAAGAACTCTATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATAT
GGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGA
ACCAACCTTTGCTAAACTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGAC
TGGTATGTACTATCTTCGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCC
AATCGTATCTCAAACTCCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAA
AACTCCAACTAAAACTCCAAACTCTTCAAATCGTATCTCTACTAGTCCAACGTAATAATT
TAACAAGTCCAATTCGTTTTAATATAACCCAACAACAACAACAACAACAACAACAACAAC
AACAACAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
*hcy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLN
SDIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQT
SKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKT
LERSYLHRINGKIVERPQHMLMRV---

---IYSRRVLAGEFTIVNKQLLEDLMELGI*spemknqivaargsiqsiggipddlkely
ktvweirqrtlidmaadrgafidqsqsfnvfiaeptfakltsmhfyswkkglktgmyylr
trpaadaiqftvdpivsqtpkpvenninsttplktptktpnssnristspt**fnksnsf
*ynpttttttttttttk*
Translated Amino Acid sequence (All Frames) 
Frame A:
tniviki*nfyir**vivlm*lqiksqrcml*kemvqkkmyhliklhqefhfyvkwnqn*
iqi*liqlk*hkk*lveyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifink
lqrvl*rqlrnnmnsliqraiywhhwsarssmks**nmvrdwrvsliiivisitisldsk
hwnvpifivsmvklssvhntc*cvs---

---tftvvvf*qvnsqlstnnyskiswnwafdhqr*riksllhvvpfnpsvaslmi*kns
ikqfgksvkelssiwllivvlssikvkvsmfsllnqpllnspqcisthgrkv*rlvctif
vlvlplmqfnslliqsylklqnqlkii*tqlhhlklqlklqtlqivsllvqrnnltspir
fnitqqqqqqqqqqqqqn

Frame B:
ltlllkfkifilddk**y*cnsk*rvkdvcckkrwykrkcii**nyiknfifm*ngtkik
frys*sn*sstkss*wsisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*tn
fkefcrds*eti*ih*skeqfigtigqqgal*nrnetw*eigech*lls*frlrflwiqn
igtflsssyqw*ncrastthvdacl---

---hlqsscfsr*ihncqqtitrrshgighlitrdeesnrcctwfhsihrwhp**fertl
*nslgnpsknshrygc*swcfhrskskfqcfhc*tnlc*thlnafllmeerfkdwyvlss
ysscr*cnsihc*snrisnskts*k*yklnytt*nsn*nsklfksyly*snvii*qvqfv
li*pnnnnnnnnnnnnki

Frame C:
*hcy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLN
SDIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQT
SKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKT
LERSYLHRINGKIVERPQHMLMRV---

---IYSRRVLAGEFTIVNKQLLEDLMELGI*spemknqivaargsiqsiggipddlkely
ktvweirqrtlidmaadrgafidqsqsfnvfiaeptfakltsmhfyswkkglktgmyylr
trpaadaiqftvdpivsqtpkpvenninsttplktptktpnssnristspt**fnksnsf
*ynpttttttttttttk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE778 (CHE778Q) /CSM/CH/CHE7-D/CHE778Q.Seq.d/                       2258   0.0
VHC688 (VHC688Q) /CSM/VH/VHC6-D/VHC688Q.Seq.d/                       1221   0.0
SHD315 (SHD315Q) /CSM/SH/SHD3-A/SHD315Q.Seq.d/                       1221   0.0
SHC647 (SHC647Q) /CSM/SH/SHC6-B/SHC647Q.Seq.d/                       1221   0.0
SHA878 (SHA878Q) /CSM/SH/SHA8-D/SHA878Q.Seq.d/                       1221   0.0
CHO757 (CHO757Q) /CSM/CH/CHO7-C/CHO757Q.Seq.d/                       1221   0.0
CHG522 (CHG522Q) /CSM/CH/CHG5-A/CHG522Q.Seq.d/                       1221   0.0
AHR370 (AHR370Q) /CSM/AH/AHR3-C/AHR370Q.Seq.d/                       1221   0.0
AHK759 (AHK759Q) /CSM/AH/AHK7-C/AHK759Q.Seq.d/                       1221   0.0
AHG718 (AHG718Q) /CSM/AH/AHG7-A/AHG718Q.Seq.d/                       1221   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z19158|Z19158.1 Caenorhabditis elegans cosmid T23G5.               48   3e-14  7
AW332783|AW332783.1 S13A1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   8e-11  3
AW332364|AW332364.1 S7E4 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   8e-11  3
AW335099|AW335099.1 S43B7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   1e-10  3
AW334328|AW334328.1 S33D5 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   1e-10  3
AL403114|AL403114.1 T3 end of clone AT0AA006F08 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    54   6e-09  5
AU216303|AU216303.1 Caenorhabditis elegans cDNA clone:yk836b04 : 3' end, single read.    48   2e-08  4
AW333566|AW333566.1 S23D1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48   2e-08  3
BJ815809|BJ815809.1 Caenorhabditis elegans cDNA clone:yk1558g12 : 3' end.    48   2e-08  4
CR382139|CR382139.1 Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii.    56   2e-08  2
dna update 2004. 9.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   347   5e-94
S34807(S34807) ribonucleoside-diphosphate reductase (EC 1.17.4.1...   208   3e-52
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070...   203   8e-51
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons...   201   4e-50
CR382139_247(CR382139|pid:none) Debaryomyces hansenii strain CBS...   198   3e-49
AE016817_343(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   196   1e-48
(P07742) RecName: Full=Ribonucleoside-diphosphate reductase larg...   194   4e-48
BC109486_1(BC109486|pid:none) Bos taurus ribonucleotide reductas...   194   4e-48
BC003299_1(BC003299|pid:none) Mus musculus ribonucleotide reduct...   194   4e-48
AF107045_1(AF107045|pid:none) Homo sapiens ribonucleotide reduct...   194   7e-48
protein update 2009. 3.31
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHE778 is cyt
5' end seq. ID CHE778F
5' end seq. 
>CHE778F.Seq
ACTAACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATG
TAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATG
TATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAA
ATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAG
GTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACAC
GTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAA
CTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCA
ATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGA
GATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAA
CATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGCGTCCACAACACA
TGTTGATGCGTGTCTCNNNNNNNNNN
Length of 5' end seq. 626
3' end seq. ID CHE778Z
3' end seq. 
>CHE778Z.Seq
NNNNNNNNNNACATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAA
CAATTACTCGAAGATCTCATGGAATTGGGCATTTGATCACCAGAGATGAAGAATCAAATC
GTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTC
TATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGT
GCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAA
CTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTT
CGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACT
CCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAAAACT
CCAAACTCTTCAAATCGTATCTCTACTAGTCCAACGTAATAATTTAACAAGTCCAATTCG
TTTTAATATAACCCAACAACAACAACAACAACAACAACAACAACAACAACAAAATAA
Length of 3' end seq. 597
Connected seq. ID CHE778P
Connected seq. 
>CHE778P.Seq
ACTAACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATG
TAACTCCAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATG
TATCATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAA
ATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAG
GTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACAC
GTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAA
CTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCA
ATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGA
GATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAA
CATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGCGTCCACAACACA
TGTTGATGCGTGTCTC----------ACATTTACAGTCGTCGTGTTTTAGCAGGTGAATT
CACAATTGTCAACAAACAATTACTCGAAGATCTCATGGAATTGGGCATTTGATCACCAGA
GATGAAGAATCAAATCGTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGA
TGATTTGAAAGAACTCTATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATAT
GGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGA
ACCAACCTTTGCTAAACTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGAC
TGGTATGTACTATCTTCGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCC
AATCGTATCTCAAACTCCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAA
AACTCCAACTAAAACTCCAAACTCTTCAAATCGTATCTCTACTAGTCCAACGTAATAATT
TAACAAGTCCAATTCGTTTTAATATAACCCAACAACAACAACAACAACAACAACAACAAC
AACAACAAAATAA
Length of connected seq. 1203
Full length Seq ID -
Full length Seq. -
Length of full length seq. -