CHE770
Library CH
(Link to library)
Clone ID CHE770
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14292-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHE770 (CHE770Q) /CSM/CH/CHE7-C/CHE770Q.Seq.d/
AATTCAGTCGAAATTGAAAACGACATATGAAACAGATAAAGAAAATTATCAATAAATAAT
AAATAAATAAAATAAAATAAATTTAAAAAACAAATAAATTTAAAATAAATAAAAATCTAA
AAACTAAATTTAAAATATAATAGTAATAATAATAATAATAATAATAATAATAATAATAAT
AATATAAACTTATAAAATTTTTCATTGAACATCATTTTTTTTTTTAAAAAAAAAAAAANG
AAAAANCTTTTNNCCNTTTTTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
nsveiendi*nr*rklsinnk*ik*nkfkkqinlk*iki*KLNLKYNSNNNNNNNNNNNN
NINL*nfslniifffkkkkxkxlxxxf*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
nsveiendi*nr*rklsinnk*ik*nkfkkqinlk*iki*KLNLKYNSNNNNNNNNNNNN
NINL*nfslniifffkkkkxkxlxxxf*kk---


Frame B:
iqsklkttyetdkenyq*iink*nkinlknk*i*nk*kskn*i*niiviiiiiiiiiiii
i*tykifh*tsffflkkkkxkxfxpffkkk---


Frame C:
fsrn*krhmkqikkiink**inkik*i*ktnkfkinknlktkfki***************
yklikffiehhfff*kkkxekxfxxflkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE770 (CHE770Q) /CSM/CH/CHE7-C/CHE770Q.Seq.d/ 70 2e-11
VHQ472 (VHQ472Q) /CSM/VH/VHQ4-C/VHQ472Q.Seq.d/ 32 4.2
VHQ312 (VHQ312Q) /CSM/VH/VHQ3-A/VHQ312Q.Seq.d/ 32 4.2
VHN266 (VHN266Q) /CSM/VH/VHN2-C/VHN266Q.Seq.d/ 32 4.2
VHH727 (VHH727Q) /CSM/VH/VHH7-B/VHH727Q.Seq.d/ 32 4.2
VHG826 (VHG826Q) /CSM/VH/VHG8-B/VHG826Q.Seq.d/ 32 4.2
VHB525 (VHB525Q) /CSM/VH/VHB5-B/VHB525Q.Seq.d/ 32 4.2
VFC770 (VFC770Q) /CSM/VF/VFC7-C/VFC770Q.Seq.d/ 32 4.2
AFB187 (AFB187Q) /CSM/AF/AFB1-D/AFB187Q.Seq.d/ 32 4.2

own update 2002.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CE792623|CE792623.1 tigr-gss-dog-17000330901148 Dog Library Canis familiaris genomic,genomic survey sequence. 44 1.2 1
CB836539|CB836539.1 VVE074B06_219936 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE074B06 5, mRNA sequence. 40 18 1
CB836013|CB836013.1 VVE064C08_170121 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE064C08 5, mRNA sequence. 40 18 1
CB835740|CB835740.1 VVE059C01_169301 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE059C01 5, mRNA sequence. 40 18 1
AC128931|AC128931.3 Rattus norvegicus clone CH230-369A6, WORKING DRAFT SEQUENCE, 1 ordered piece. 40 18 1
CB837553|CB837553.1 VVE049F07_231260 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE049F07 5, mRNA sequence. 40 18 1
CB837388|CB837388.1 VVE088A10_222280 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE088A10 5, mRNA sequence. 40 18 1
CB836398|CB836398.1 VVE071F12_219550 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE071F12 5, mRNA sequence. 40 18 1
CB835690|CB835690.1 VVE058D11_169173 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE058D11 5, mRNA sequence. 40 18 1
CB835159|CB835159.1 VVE019H10_156186 An expressed sequence tag database for abiotic stressed roots of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVE019H10 5, mRNA sequence. 40 18 1
dna update 2004. 9.26
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 61,050,563
protein update 2009. 3.31
PSORT

psg: 0.52 gvh: -0.21 alm: 0.97 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHE770 is nuc

5' end seq. ID CHE770F
5' end seq.
>CHE770F.Seq
AATTCAGTCGAAATTGAAAACGACATATGAAACAGATAAAGAAAATTATCAATAAATAAT
AAATAAATAAAATAAAATAAATTTAAAAAACAAATAAATTTAAAATAAATAAAAATCTAA
AAACTAAATTTAAAATATAATAGTAATAATAATAATAATAATAATAATAATAATAATAAT
AATATAAACTTATAAAATTTTTCATTGAACATCATTTTTTTTTTTAAAAAAAAAAAAANG
AAAAANCTTTTNNCCNTTTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 282
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -