CHE694
Library CH
(Link to library)
Clone ID CHE694
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHE694P
(Link to Original site)
Representative DNA sequence
>CHE694 (CHE694Q) /CSM/CH/CHE6-D/CHE694Q.Seq.d/
AACAAAAAAAAACATGAATAGATTATCAAATATTATTAAAACTAATCCTATTTCAAATAT
TATTAAGAGTTCAAATAAAAGATATTTTATTTCAACAACTAATAATATAAATAAAATTTT
AATCAACAATAATAAAAATAATAATTTAACAAATAGTTCATTGTTTTCAAATTCATCACC
ATCATCATCATTATTTTATCAACAAATTAGAAATTTTCAAGGAGGCAATGGAGGAGGTCA
ACAACCACCACCACAAGAACCATGGGTATCACCTGATAATGTTCCACCAGGAGAAGCATT
AAAAAAGTATACTAAAGATTTAACAGAGATAGCAAAGAGTGGTAAATTAGACCCAGTAAT
TGGTAGAGATGAAGAAATTCGTCGTACAATTCAAGTATTAAGTAGAAGAACTAAAAACAA
TCCAGTGTTGATTGGTGAACCAGGTGTTGGTAAAACTGCAATTGTTGAAGGTTTAGCACA
AAGAATTATAAATGGTGATGTACCAGATAGTATAAAGAATAAACGTGTATTGACATTGGA
TTTAGCATCGATTGTGGCTGGTGCAAAGTTXXXXXXXXXXGAGGGTGGTACATTAACTGA
AGCNGTACGTAGACGTCCTTACTCTTTGGTTCTATTTGATGAGTTTNAAAAAGCACATAA
AGAAGTTAGCAATTTACTCTTACAAATTTTGGATGATGGTCATATCGCAGATAGTCAAGG
TAGGAAAATAGATTTCAGAAATACAATGGTAATCCTANCAAGTAATTTGGGTGCAGAAAT
TTTAGCAAATTTNCCTGATAATACACCTTCAGCAACAGCTAGAGAAGAGGTAATGGGTGT
AGTTCGTTCACGTTTCCCACCAGAATTTTTAAATAGAATCGATGATATGATCCTTTTCAA
TCGTTTATNTCGTAAAGATATGGATAAAATCGTTGAAATTCAATTANATGATCTCAGAAA
ATTACTCACTGAAAAACATATAGCTCTCAATGTTAAAGAAGATGGTCTCGATTGGTTGGC
CGATCAAGGTTATGATCCAATCTATGGTGCTCGTCCATTAAAACGTGTTATTCAAAAANC
TCGTATTAAATCCAATGGCAAAACAAATACTTGAAGGTAAAATTAAAGATCANCAAGNTG
TTACAATTTNCTGCGGATAAATCAAAAGNAGAATTAAAAATTACAAGTCAATAAAATAAA
ATA
sequence update 2002.10.25
Translated Amino Acid sequence
TKKNMNRLSNIIKTNPISNIIKSSNKRYFISTTNNINKILINNNKNNNLTNSSLFSNSSP
SSSLFYQQIRNFQGGNGGGQQPPPQEPWVSPDNVPPGEALKKYTKDLTEIAKSGKLDPVI
GRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGDVPDSIKNKRVLTLD
LASIVAGAK---

---EGGTLTEAVRRRPYSLVLFDEFXKAHKEVSNLLLQILDDGHIADSQGRKIDFRNTMV
ILXSNLGAEILANXPDNTPSATAREEVMGVVRSRFPPEFLNRIDDMILFNRLXRKDMDKI
VEIQLXDLRKLLTEKHIALNVKEDGLDWLADQGYDPIYGARPLKRVIQKXRIKSNGKTNT
*r*n*rsxxcynxlrinqkxn*klqvnkik


Translated Amino Acid sequence (All Frames)
Frame A:
nkkkhe*iikyy*n*syfkyy*efk*kifyfnn**yk*nfnqq**k**fnk*fivfkfit
iiiiilstn*kfsrrqwrrstttttrtmgit**cstrrsikkvy*rfnrdskew*irpsn
w*r*rnssynssik*kn*kqssvdw*trcw*ncnc*rfstknykw*ctr*yke*tcidig
fsidcgwckv---

---EGGTLTEAVRRRPYSLVLFDEFXKAHKEVSNLLLQILDDGHIADSQGRKIDFRNTMV
ILXSNLGAEILANXPDNTPSATAREEVMGVVRSRFPPEFLNRIDDMILFNRLXRKDMDKI
VEIQLXDLRKLLTEKHIALNVKEDGLDWLADQGYDPIYGARPLKRVIQKXRIKSNGKTNT
*r*n*rsxxcynxlrinqkxn*klqvnkik

Frame B:
TKKNMNRLSNIIKTNPISNIIKSSNKRYFISTTNNINKILINNNKNNNLTNSSLFSNSSP
SSSLFYQQIRNFQGGNGGGQQPPPQEPWVSPDNVPPGEALKKYTKDLTEIAKSGKLDPVI
GRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGDVPDSIKNKRVLTLD
LASIVAGAK---

---rvvh*lkxyvdvltlwfylmsxkkhikklaiysykfwmmvisqivkvgk*iseiqw*
sxqviwvqkf*qixliihlqqqlekr*wv*fvhvshqnf*iesmi*sfsivyxvkiwiks
lkfnxmisenyslkni*lsmlkkmvsigwpikvmiqsmvlvh*nvlfkxlvlnpmakqil
egkikdxqxvtixcg*ikxriknyksik*n

Frame C:
qkkt*idyqillklilfqillrvqikdilfqqlii*ikf*stiikiii*qivhcfqihhh
hhhyfinkleifkeameevnnhhhknhgyhlimfhqekh*ksilki*qr*qrvvn*tq*l
vemkkfvvqfky*veelktiqc*lvnqvlvklqllkv*hkel*mvmyqiv*rinvy*hwi
*hrlwlvqs---

---gwyin*sxt*tsllfgsi**vxkst*rs*qftltnfg*wsyrr*sr*enrfqkyngn
pxk*fgcrnfskfx**ytfsns*rrgngcssftfptrifk*nr*ydpfqsfxs*ryg*nr
*nsix*sqkith*ktyssqc*rrwsrlvgrsrl*snlwcssiktcyskxsy*iqwqnkyl
kvklkixkxlqfxadkskxelkitsq*nki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE694 (CHE694Q) /CSM/CH/CHE6-D/CHE694Q.Seq.d/ 1953 0.0
CHR440 (CHR440Q) /CSM/CH/CHR4-B/CHR440Q.Seq.d/ 1120 0.0
CHM815 (CHM815Q) /CSM/CH/CHM8-A/CHM815Q.Seq.d/ 1120 0.0
CHG811 (CHG811Q) /CSM/CH/CHG8-A/CHG811Q.Seq.d/ 1120 0.0
CHG723 (CHG723Q) /CSM/CH/CHG7-A/CHG723Q.Seq.d/ 1120 0.0
AHC215 (AHC215Q) /CSM/AH/AHC2-A/AHC215Q.Seq.d/ 1120 0.0
CHI546 (CHI546Q) /CSM/CH/CHI5-B/CHI546Q.Seq.d/ 1112 0.0
AHO680 (AHO680Q) /CSM/AH/AHO6-D/AHO680Q.Seq.d/ 1112 0.0
CHF391 (CHF391Q) /CSM/CH/CHF3-D/CHF391Q.Seq.d/ 1110 0.0
CHF829 (CHF829Q) /CSM/CH/CHF8-B/CHF829Q.Seq.d/ 1108 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX145048|AX145048.1 Sequence 3770 from Patent WO0134809. 125 2e-24 1
AR485684|AR485684.1 Sequence 3770 from patent US 6703492. 125 2e-24 1
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence. 125 2e-24 1
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome. 125 2e-24 1
AX143827|AX143827.1 Sequence 2549 from Patent WO0134809. 125 2e-24 1
AR484856|AR484856.1 Sequence 2549 from patent US 6703492. 125 2e-24 1
AR347422|AR347422.1 Sequence 2033 from patent US 6583275. 105 3e-22 2
AP003360|AP003360.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 3/9. 98 1e-20 2
AP003132|AP003132.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 4/10. 98 1e-20 2
AP004825|AP004825.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 4/10. 98 1e-20 2
dna update 2004. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001001_5364(CP001001|pid:none) Methylobacterium radiotolerans ... 227 1e-58
CP000133_3698(CP000133|pid:none) Rhizobium etli CFN 42, complete... 226 1e-58
CP000009_1413(CP000009|pid:none) Gluconobacter oxydans 621H, com... 226 3e-58
CP001074_3964(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 223 2e-57
CP001191_3485(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 222 2e-57
CP000911_1613(CP000911|pid:none) Brucella suis ATCC 23445 chromo... 224 3e-57
(Q7CEG6) RecName: Full=Chaperone protein clpB; &AE014291_1807(A... 224 3e-57
CP000872_1791(CP000872|pid:none) Brucella canis ATCC 23365 chrom... 224 6e-57
CP000943_4823(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 219 7e-57
(Q98G96) RecName: Full=Chaperone protein clpB; &BA000012_2639(B... 223 1e-56
protein update 2009. 3.31
PSORT

psg: 0.68 gvh: 0.47 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.61 mip: 0.12
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

96.0 %: mitochondrial
4.0 %: nuclear

>> prediction for CHE694 is mit

5' end seq. ID CHE694F
5' end seq.
>CHE694F.Seq
AACAAAAAAAAACATGAATAGATTATCAAATATTATTAAAACTAATCCTATTTCAAATAT
TATTAAGAGTTCAAATAAAAGATATTTTATTTCAACAACTAATAATATAAATAAAATTTT
AATCAACAATAATAAAAATAATAATTTAACAAATAGTTCATTGTTTTCAAATTCATCACC
ATCATCATCATTATTTTATCAACAAATTAGAAATTTTCAAGGAGGCAATGGAGGAGGTCA
ACAACCACCACCACAAGAACCATGGGTATCACCTGATAATGTTCCACCAGGAGAAGCATT
AAAAAAGTATACTAAAGATTTAACAGAGATAGCAAAGAGTGGTAAATTAGACCCAGTAAT
TGGTAGAGATGAAGAAATTCGTCGTACAATTCAAGTATTAAGTAGAAGAACTAAAAACAA
TCCAGTGTTGATTGGTGAACCAGGTGTTGGTAAAACTGCAATTGTTGAAGGTTTAGCACA
AAGAATTATAAATGGTGATGTACCAGATAGTATAAAGAATAAACGTGTATTGACATTGGA
TTTAGCATCGATTGTGGCTGGTGCAAAGTTNNNNNNNNNN
Length of 5' end seq. 580
3' end seq. ID CHE694Z
3' end seq.
>CHE694Z.Seq
NNNNNNNNNNGAGGGTGGTACATTAACTGAAGCNGTACGTAGACGTCCTTACTCTTTGGT
TCTATTTGATGAGTTTNAAAAAGCACATAAAGAAGTTAGCAATTTACTCTTACAAATTTT
GGATGATGGTCATATCGCAGATAGTCAAGGTAGGAAAATAGATTTCAGAAATACAATGGT
AATCCTANCAAGTAATTTGGGTGCAGAAATTTTAGCAAATTTNCCTGATAATACACCTTC
AGCAACAGCTAGAGAAGAGGTAATGGGTGTAGTTCGTTCACGTTTCCCACCAGAATTTTT
AAATAGAATCGATGATATGATCCTTTTCAATCGTTTATNTCGTAAAGATATGGATAAAAT
CGTTGAAATTCAATTANATGATCTCAGAAAATTACTCACTGAAAAACATATAGCTCTCAA
TGTTAAAGAAGATGGTCTCGATTGGTTGGCCGATCAAGGTTATGATCCAATCTATGGTGC
TCGTCCATTAAAACGTGTTATTCAAAAANCTCGTATTAAATCCAATGGCAAAACAAATAC
TTGAAGGTAAAATTAAAGATCANCAAGNTGTTACAATTTNCTGCGGATAAATCAAAAGNA
GAATTAAAAATTACAAGTCAATAAAATAAAATA
Length of 3' end seq. 633
Connected seq. ID CHE694P
Connected seq.
>CHE694P.Seq
AACAAAAAAAAACATGAATAGATTATCAAATATTATTAAAACTAATCCTATTTCAAATAT
TATTAAGAGTTCAAATAAAAGATATTTTATTTCAACAACTAATAATATAAATAAAATTTT
AATCAACAATAATAAAAATAATAATTTAACAAATAGTTCATTGTTTTCAAATTCATCACC
ATCATCATCATTATTTTATCAACAAATTAGAAATTTTCAAGGAGGCAATGGAGGAGGTCA
ACAACCACCACCACAAGAACCATGGGTATCACCTGATAATGTTCCACCAGGAGAAGCATT
AAAAAAGTATACTAAAGATTTAACAGAGATAGCAAAGAGTGGTAAATTAGACCCAGTAAT
TGGTAGAGATGAAGAAATTCGTCGTACAATTCAAGTATTAAGTAGAAGAACTAAAAACAA
TCCAGTGTTGATTGGTGAACCAGGTGTTGGTAAAACTGCAATTGTTGAAGGTTTAGCACA
AAGAATTATAAATGGTGATGTACCAGATAGTATAAAGAATAAACGTGTATTGACATTGGA
TTTAGCATCGATTGTGGCTGGTGCAAAGTT----------GAGGGTGGTACATTAACTGA
AGCNGTACGTAGACGTCCTTACTCTTTGGTTCTATTTGATGAGTTTNAAAAAGCACATAA
AGAAGTTAGCAATTTACTCTTACAAATTTTGGATGATGGTCATATCGCAGATAGTCAAGG
TAGGAAAATAGATTTCAGAAATACAATGGTAATCCTANCAAGTAATTTGGGTGCAGAAAT
TTTAGCAAATTTNCCTGATAATACACCTTCAGCAACAGCTAGAGAAGAGGTAATGGGTGT
AGTTCGTTCACGTTTCCCACCAGAATTTTTAAATAGAATCGATGATATGATCCTTTTCAA
TCGTTTATNTCGTAAAGATATGGATAAAATCGTTGAAATTCAATTANATGATCTCAGAAA
ATTACTCACTGAAAAACATATAGCTCTCAATGTTAAAGAAGATGGTCTCGATTGGTTGGC
CGATCAAGGTTATGATCCAATCTATGGTGCTCGTCCATTAAAACGTGTTATTCAAAAANC
TCGTATTAAATCCAATGGCAAAACAAATACTTGAAGGTAAAATTAAAGATCANCAAGNTG
TTACAATTTNCTGCGGATAAATCAAAAGNAGAATTAAAAATTACAAGTCAATAAAATAAA
ATA
Length of connected seq. 1193
Full length Seq ID -
Full length Seq. -
Length of full length seq. -