>CHE693 (CHE693Q) /CSM/CH/CHE6-D/CHE693Q.Seq.d/
XXXXXXXXXXGCAGAATTCATGTTTGATAGTCCAAATGCTTTGATTCGTATAGATATGTC
TGAATACATGGAGAAATTCTCTGTAAGTAGATTAATTGGTGCTCCACCAGGTTATGTTGG
CTATGAAGAGGGTGGTACATTAACTGAAGCTGTACGTAGACGTCCTTACTCTTTGGTTCT
ATTTGATGAGTTTGAAAAAGCACATAAAGAAGTTAGCAATTTACTCTTACAAATTTTGGA
TGATGGTCATATCACAGATAGTCAAGGTAGGAAAATAGATTTCAGAAATACAATGGTAAT
CCTAACAAGTAATTTGGGTGCAGAAATTTTAGCAAATTTACCTGATAATACACCTTCAGC
AACAGCTAGAGAAGAGGTAATGGGTGTAGTTCGTTCACGTTTCCCACCAGAATTTTTAAA
TAGAATCGATGATATGATCCTTTTCAATCGTTTATCTCGTAAAGATATGGATAAAATCGT
TGAAATTCAATTAGATGATCTCAGAAAATTACTCACTGAAAAACATATAGCTCTCAATGT
TAAAGAAGATGGTCTCGATTGGTTGGCCGATCAAGGTTATGATCCAATCTATGGTGCTCG
TCCATTAAAACGTGTTATTC

---EFMFDSPNALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGTLTEAVRRRPYSLVLF
DEFEKAHKEVSNLLLQILDDGHITDSQGRKIDFRNTMVILTSNLGAEILANLPDNTPSAT
AREEVMGVVRSRFPPEFLNRIDDMILFNRLSRKDMDKIVEIQLDDLRKLLTEKHIALNVK
EDGLDWLADQGYDPIYGARPLKRVI

Frame A:
---qnsclivqml*fv*iclntwrnsl*vd*lvlhqvmlamkrvvh*lklyvdvltlwfy
lmslkkhikklaiysykfwmmvisqivkvgk*iseiqw*s*qviwvqkf*qiyliihlqq
qlekr*wv*fvhvshqnf*iesmi*sfsivylvkiwikslkfn*misenyslkni*lsml
kkmvsigwpikvmiqsmvlvh*nvlf


Frame B:
---rihv**skcfdsyryv*ihgeilck*inwcstrlcwl*rgwyin*sct*tsllfgsi
**v*kst*rs*qftltnfg*wsyhr*sr*enrfqkyngnpnk*fgcrnfskft**ytfsn
s*rrgngcssftfptrifk*nr*ydpfqsfis*ryg*nr*nsir*sqkith*ktyssqc*
rrwsrlvgrsrl*snlwcssiktcy


Frame C:
---EFMFDSPNALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGTLTEAVRRRPYSLVLF
DEFEKAHKEVSNLLLQILDDGHITDSQGRKIDFRNTMVILTSNLGAEILANLPDNTPSAT
AREEVMGVVRSRFPPEFLNRIDDMILFNRLSRKDMDKIVEIQLDDLRKLLTEKHIALNVK
EDGLDWLADQGYDPIYGARPLKRVI

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHI111 (CHI111Q) /CSM/CH/CHI1-A/CHI111Q.Seq.d/                       1209   0.0
CHF686 (CHF686Q) /CSM/CH/CHF6-D/CHF686Q.Seq.d/                       1209   0.0
CHF391 (CHF391Q) /CSM/CH/CHF3-D/CHF391Q.Seq.d/                       1209   0.0
CHE693 (CHE693Q) /CSM/CH/CHE6-D/CHE693Q.Seq.d/                       1209   0.0
AHO680 (AHO680Q) /CSM/AH/AHO6-D/AHO680Q.Seq.d/                       1209   0.0
AHM171 (AHM171Q) /CSM/AH/AHM1-C/AHM171Q.Seq.d/                       1209   0.0
AHI835 (AHI835Q) /CSM/AH/AHI8-B/AHI835Q.Seq.d/                       1209   0.0
AHH487 (AHH487Q) /CSM/AH/AHH4-D/AHH487Q.Seq.d/                       1209   0.0
AHE805 (AHE805Q) /CSM/AH/AHE8-A/AHE805Q.Seq.d/                       1209   0.0
VHJ365 (VHJ365Q) /CSM/VH/VHJ3-C/VHJ365Q.Seq.d/                       1207   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          78   2e-19  3
AW400064|AW400064.1 707061D01.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence.    82   1e-11  1
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    78   2e-11  2
AG268751|AG268751.1 Cyanidioschyzon merolae genomic DNA, reverse end of BAC clone:H1G09.    52   4e-11  3
AG271488|AG271488.1 Cyanidioschyzon merolae genomic DNA, forward end of BAC clone:M4L06.    52   5e-11  3
BF728490|BF728490.1 1000063B06.x1 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence.    80   5e-11  1
CA240369|CA240369.1 SCSBFL4067B03.g FL4 Saccharum officinarum cDNA clone SCSBFL4067B03 5', mRNA sequence.    80   5e-11  1
AG268259|AG268259.1 Cyanidioschyzon merolae genomic DNA, forward end of BAC clone:H5A13.    52   5e-11  3
AG267129|AG267129.1 Cyanidioschyzon merolae genomic DNA, forward end of BAC clone:H1I23.    52   5e-11  3
AG273689|AG273689.1 Cyanidioschyzon merolae genomic DNA, reverse end of BAC clone:M3B08.    52   5e-11  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000009_1413(CP000009|pid:none) Gluconobacter oxydans 621H, com...   285   7e-76
CP001001_5364(CP001001|pid:none) Methylobacterium radiotolerans ...   285   7e-76
(Q98G96) RecName: Full=Chaperone protein clpB;  &BA000012_2639(B...   280   2e-74
CP000133_3698(CP000133|pid:none) Rhizobium etli CFN 42, complete...   280   3e-74
CP000911_1613(CP000911|pid:none) Brucella suis ATCC 23445 chromo...   279   4e-74
(Q7CEG6) RecName: Full=Chaperone protein clpB;  &AE014291_1807(A...   279   4e-74
AP007255_1560(AP007255|pid:none) Magnetospirillum magneticum AMB...   278   7e-74
CP000872_1791(CP000872|pid:none) Brucella canis ATCC 23365 chrom...   278   7e-74
CP000943_4823(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   278   7e-74
CP001074_3964(CP001074|pid:none) Rhizobium etli CIAT 652, comple...   278   9e-74

 psg: 0.75  gvh: 0.28  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.08
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHE693 is cyt

>CHE693Z.Seq
NNNNNNNNNNGCAGAATTCATGTTTGATAGTCCAAATGCTTTGATTCGTATAGATATGTC
TGAATACATGGAGAAATTCTCTGTAAGTAGATTAATTGGTGCTCCACCAGGTTATGTTGG
CTATGAAGAGGGTGGTACATTAACTGAAGCTGTACGTAGACGTCCTTACTCTTTGGTTCT
ATTTGATGAGTTTGAAAAAGCACATAAAGAAGTTAGCAATTTACTCTTACAAATTTTGGA
TGATGGTCATATCACAGATAGTCAAGGTAGGAAAATAGATTTCAGAAATACAATGGTAAT
CCTAACAAGTAATTTGGGTGCAGAAATTTTAGCAAATTTACCTGATAATACACCTTCAGC
AACAGCTAGAGAAGAGGTAATGGGTGTAGTTCGTTCACGTTTCCCACCAGAATTTTTAAA
TAGAATCGATGATATGATCCTTTTCAATCGTTTATCTCGTAAAGATATGGATAAAATCGT
TGAAATTCAATTAGATGATCTCAGAAAATTACTCACTGAAAAACATATAGCTCTCAATGT
TAAAGAAGATGGTCTCGATTGGTTGGCCGATCAAGGTTATGATCCAATCTATGGTGCTCG
TCCATTAAAACGTGTTATTC