>CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/
ATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATT
AGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAA
GAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAA
ATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAAT
AAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACA
GATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGT
GAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAG
TTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCC
ATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCA
AAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTG
ATTTGCGAACTTXXXXXXXXXX

IHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQ
MLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQS
EAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFP
KLREKLDDPEPSVVSCSVNVICE---

Frame A:
IHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQ
MLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQS
EAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFP
KLREKLDDPEPSVVSCSVNVICE---


Frame B:
ftkny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpskn*hifk
c*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqliklerisyhrikv
kpi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr*dqhsq
s*ernwmipshrlyhaqsm*fan---


Frame C:
spktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpkiniysn
vri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfliiesk*
slfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisriaktsipk
vkreig*sraigcimlsqcdlrt---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1172   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1172   0.0
CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/                       1172   0.0
AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/                       1172   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1170   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1168   0.0
AFG346 (AFG346Q) /CSM/AF/AFG3-B/AFG346Q.Seq.d/                       1162   0.0
SHA829 (SHA829Q) /CSM/SH/SHA8-B/SHA829Q.Seq.d/                       1160   0.0
VHL879 (VHL879Q) /CSM/VH/VHL8-D/VHL879Q.Seq.d/                       1158   0.0
SHL605 (SHL605Q) /CSM/SH/SHL6-A/SHL605Q.Seq.d/                       1158   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC021603|AC021603.3 Homo sapiens clone RP11-215E12, WORKING DRAFT SEQUENCE, 32 unordered pieces.    44   1e-04  6
AL935329|AL935329.11 Zebrafish DNA sequence from clone CH211-253P2 in linkage group 12.    54   2e-04  4
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   6e-04  19
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    36   0.001  11
AC027031|AC027031.5 Homo sapiens chromosome 8, clone RP11-778D12, complete sequence.    34   0.005  7
AC139677|AC139677.4 Homo sapiens chromosome 17, clone RP11-1070B7, complete sequence.    34   0.012  9
AC008498|AC008498.3 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence.    44   0.013  7
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.014  10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    30   0.020  9
AC006705|AC006705.1 Caenorhabditis elegans clone Y108G3c, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   0.020  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   256   3e-67
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   256   3e-67
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   256   3e-67
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   256   3e-67
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   254   1e-66
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   254   1e-66
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   254   1e-66
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   254   1e-66
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   254   1e-66
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   252   5e-66

 psg: 0.67  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHE687 is cyt

>CHE687F.Seq
ATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATT
AGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAA
GAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAA
ATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAAT
AAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACA
GATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGT
GAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAG
TTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCC
ATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCA
AAGTTAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTG
ATTTGCGAACTTNNNNNNNNNN