CHE682 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHE682
Library	CH (Link to library)
Clone ID	CHE682 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15679-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHE6-D/CHE682Q.Seq.d/
Representative seq. ID	CHE682P (Link to Original site)
Representative DNA sequence	>CHE682 (CHE682Q) /CSM/CH/CHE6-D/CHE682Q.Seq.d/ AATTAACAAATTTTTTATTAAATTAAGTTAAAAATGGACTCATTGCTTAAAATTCTAAAC ATAAAGTTTTTTTAAAAAAAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTGAA ATTAAAACAGTTTTTAATTCANATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACA TCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAA GCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTT GAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAA GATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCC AATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGAT GATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTG GCAGGCTGCAACCTAGCAAACAAATCATCCGATGAGGXXXXXXXXXXTGTTCAATATCNT AGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGANC ANAGTTAAAGGTATTTCGAATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACT CCAATTAAAAATCAACCTTTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTC TTTAGATCACCAATTCAACAACAACAACAACAAACCTGTACCACTTCAACTCAATCACCA TCACCATCATCTTCATCAGCATCAACACCACCACCACCATCACAAATGCTTAATGAACAA CCAAGTAAAACTATCAATGTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTA ANTTCATTCGAAATTGAATCTTCAACAAATGAATCTGTCTNTGAATTAAAATGTAAACTT ATTAATGAAATTGATCCTGAAATGAATGNTAATGATTGGAGTATTACAAAAGAATNTGGT ACAGTTTTATTCGAATCTGCAAGATTATCATCCAGTTATTAAATCTTTTGATAATTCAGA TTCCATTAAATTGGTCCAAAGAAAAAACAAAAATTATTTTAAAAATCTAACAAAACTAAT AATAGGGTAANAAAATAAAAAAAAATAAAAAACATTAAAATAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	nqifyiklkmdsllkilnikffKKNQNNNQRHALKTEIKTVFNSXSGVTYFSILIET SSKMSLYNVIIKTFITQLQKANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSK DNEEAKLGEAMRMCFNNIESNWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGL AGCNLANKSSDE--- ---VQYXRLLTKAVQLCKVKNEKDIMXXVKGISNLSINDNNNSFNQTPIKNQPFFESSST SSPSPAFFRSPIQQQQQQTCTTSTQSPSPSSSSASTPPPPSQMLNEQPSKTINVTIDVVT DSSGTVLXSFEIESSTNESVXELKCKLINEIDPEMNXNDWSITKEXGTVLFESARLSSSY if*frfhigpkkkqklfksnktnnrvxkkkiknikin
Translated Amino Acid sequence (All Frames)	Frame A: nqifyiklkmdsllkilnikffKKNQNNNQRHALKTEIKTVFNSXSGVTYFSILIET SSKMSLYNVIIKTFITQLQKANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSK DNEEAKLGEAMRMCFNNIESNWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGL AGCNLANKSSDE--- ---csisiinqsssivskkrynxxsryfefin*****fsnsnkstffiiin fftftsflitnstttttnlyhfnsititiifisinttttitnattknyqcnycsy fkwyrfxfirnifnkiclikmty*nsnexleyykrxwysfirickiiiql lnlliiqiplnwskektkiilkiqn**gxkikknkkhnk Frame B: inkffiklskwthclkftsffkkkikiiikdmhlklklkqflixivvllifqflkh hqkchcimllrhlllnfkkliesvkfkslpmvivliqslnlirnqmnkiakklnslk imkkqnwvkqecvsiisnpigpvicqrssssvrvnllmiqvmilisvwiiivsmvw qaatqtnhpmr--- ---VQYXRLLTKAVQLCKVKNEKDIMXXVKGISNLSINDNNNSFNQTPIKNQPFFESSST SSPSPAFFRSPIQQQQQQTCTTSTQSPSPSSSSASTPPPPSQMLNEQPSKTINVTIDVVT DSSGTVLXSFEIESSTNESVXELKCKLINEIDPEMNXNDWSITKEXGTVLFESARLSSSY iffrfhigpkkkqklfksnktnnrvxkkkiknikin Frame C: ltnfllnvknglianskhkvflkkksk*sktctnnnsffxwcylffnfnni iknvivcnydiyystsksrvsnsnhylwcynlifgtkikrlkrnilr *rskigsnenvfqyriqlvqfnvkdhhhqfgsiyfkfsylefg*ylwfg rlqpskqiir--- ---fnixdypkqfncvklkmkkixxlkvfriyqlmiiiivliklqlkinlflnhhql lhlhqlsldhqfnnnnnkpvplqlnhhhhhlhqhqhhhhhhkclmnnqvklsmllmll iqvvpfxhsklnlqqmnlsxnnvnllmklilkmxmigvlqknxvqfysnlqdyhpvi ksfdnsdsiklvqrknknyfknltkliigxnkkkktlk*
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHE682 (CHE682Q) /CSM/CH/CHE6-D/CHE682Q.Seq.d/ 1392 0.0 CHI279 (CHI279Q) /CSM/CH/CHI2-D/CHI279Q.Seq.d/ 1078 0.0 AHM223 (AHM223Q) /CSM/AH/AHM2-A/AHM223Q.Seq.d/ 1021 0.0 VHM533 (VHM533Q) /CSM/VH/VHM5-B/VHM533Q.Seq.d/ 1015 0.0 AHA357 (AHA357Q) /CSM/AH/AHA3-C/AHA357Q.Seq.d/ 973 0.0 AHA131 (AHA131Q) /CSM/AH/AHA1-B/AHA131Q.Seq.d/ 973 0.0 SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/ 961 0.0 AHI541 (AHI541Q) /CSM/AH/AHI5-B/AHI541Q.Seq.d/ 961 0.0 SHE684 (SHE684Q) /CSM/SH/SHE6-D/SHE684Q.Seq.d/ 952 0.0 AHH355 (AHH355Q) /CSM/AH/AHH3-C/AHH355Q.Seq.d/ 946 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 88 5e-26 16 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 56 3e-14 18 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 38 3e-12 17 BA000026\|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 38 2e-11 28 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 44 3e-11 19 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 3e-11 16 AC114263\|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 42 7e-11 16 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 1e-09 18 AC117080\|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 36 2e-09 11 AP005140\|AP005140.4 Homo sapiens genomic DNA, chromosome 11 clone:CMB9-65A1, complete sequence. 64 2e-09 8
dna update	2005. 1.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116305_17(AC116305\|pid:none) Dictyostelium discoideum chromoso... 129 3e-28 AB049544_1(AB049544\|pid:none) Porcine enterovirus 10 gene for RN... 34 9.0 AF363453_1(AF363453\|pid:none) Porcine enterovirus 9 strain UKG/4... 34 9.0
protein update	2008.10.28
PSORT	psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 100.0 %: >> prediction for CHE682 is
5' end seq. ID	CHE682F
5' end seq.	>CHE682F.Seq AATTAACAAATTTTTTATTAAATTAAGTTAAAAATGGACTCATTGCTTAAAATTCTAAAC ATAAAGTTTTTTTAAAAAAAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTGAA ATTAAAACAGTTTTTAATTCANATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACA TCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAA GCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTT GAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAA GATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCC AATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGAT GATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTG GCAGGCTGCAACCTAGCAAACAAATCATCCGATGAGGNNNNNNNNNN
Length of 5' end seq.	587
3' end seq. ID	CHE682Z
3' end seq.	>CHE682Z.Seq NNNNNNNNNNTGTTCAATATCNTAGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTTA AAAATGAAAAAGATATAATGANCANAGTTAAAGGTATTTCGAATTTATCAATTAATGATA ATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAATCATCATCAA CTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACAAACCT GTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAACACCACCACCAC CATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTATTGATGTAGTTA CTGATTCAAGTGGTACCGTTTTAANTTCATTCGAAATTGAATCTTCAACAAATGAATCTG TCTNTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGAATGNTAATGATT GGAGTATTACAAAAGAATNTGGTACAGTTTTATTCGAATCTGCAAGATTATCATCCAGTT ATTAAATCTTTTGATAATTCAGATTCCATTAAATTGGTCCAAAGAAAAAACAAAAATTAT TTTAAAAATCTAACAAAACTAATAATAGGGTAANAAAATAAAAAAAAATAAAAAACATTA AAATAAAT
Length of 3' end seq.	668
Connected seq. ID	CHE682P
Connected seq.	>CHE682P.Seq AATTAACAAATTTTTTATTAAATTAAGTTAAAAATGGACTCATTGCTTAAAATTCTAAAC ATAAAGTTTTTTTAAAAAAAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTGAA ATTAAAACAGTTTTTAATTCANATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACA TCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAA GCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTT GAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAA GATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCC AATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGAT GATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTG GCAGGCTGCAACCTAGCAAACAAATCATCCGATGAGG----------TGTTCAATATCNT AGATTATTAACCAAAGCAGTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGANC ANAGTTAAAGGTATTTCGAATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACT CCAATTAAAAATCAACCTTTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTC TTTAGATCACCAATTCAACAACAACAACAACAAACCTGTACCACTTCAACTCAATCACCA TCACCATCATCTTCATCAGCATCAACACCACCACCACCATCACAAATGCTTAATGAACAA CCAAGTAAAACTATCAATGTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTA ANTTCATTCGAAATTGAATCTTCAACAAATGAATCTGTCTNTGAATTAAAATGTAAACTT ATTAATGAAATTGATCCTGAAATGAATGNTAATGATTGGAGTATTACAAAAGAATNTGGT ACAGTTTTATTCGAATCTGCAAGATTATCATCCAGTTATTAAATCTTTTGATAATTCAGA TTCCATTAAATTGGTCCAAAGAAAAAACAAAAATTATTTTAAAAATCTAACAAAACTAAT AATAGGGTAANAAAATAAAAAAAAATAAAAAACATTAAAATAAAT
Length of connected seq.	1235
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas