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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE644
Library CH
(Link to library)
Clone ID CHE644
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11303-1|Contig-U12956-1
Original site URL
Representative seq. ID CHE644P
(Link to Original site)
Representative DNA sequence 
>CHE644 (CHE644Q) /CSM/CH/CHE6-B/CHE644Q.Seq.d/
ATTCGTTTCTAAATTATTATATCATATATTTTTAATTTTATTTATTTATTTATTTATTTA
TTTATTTATTATTTATTTATTTATTTATTTATTAGTAAATAGTAATTATTGCTATTTTTG
TATTATCATAAAAAAAAAAXXXXXXXXXXTTTAGATAATGTTACCACCACCNGTAGAGAG
TGATGCATCCAATCCATTCGTTGTTATCACCAATGAATGTCAATGGGAGGGTAGTGCTGG
TGTATTATTGAAAAAGGATGCTTTCGATGGTCAATTGGAAATCACTTGGGCTCAATTCAT
CAATACCCTTCAAAGACATTTCTTAATTGCCACTAAACAAGATCCTGTAAGACCAAAACG
TCCACTCTCTTCCTATGATTTGAAATATATTCAAACTCATTTCTTTGGTAATCGTTCAAT
CATTCACCAACAAGATTTCGATAAATTTTGGGTTTGGTTCGGTAAATCAATGCAAACTCT
TAGATATCAAAGACATATTTCAACTTTACGGCAAGAAGGTATCATTTATGGTTATATGGG
TAGACAAGAAGTTAATGATGCTTTACAAAATCAAGATCCAGGCACATTTATTATAAGATT
TAGTGAAAGAAATCCTGGTCAATTTGGTATTGCTTATATTGGTGTTGAAATGCCAGCTCG
AATTAAACATTATTTGGTTCAACCAAATGATACTGCTGCCGCAAAGAAAACTTTCCCTGA
CTT
sequence update 2002.10.25
Translated Amino Acid sequence 
FVSKLLYHIFLILFIYLFIYLFIIYLFIYLLVNSNYCYFCIIIKKK---

---LDNVTTTXRE*ciqsircyhq*msmgg*cwciiekgcfrwsignhlgsihqypsktf
lnch*trscktktstlfl*feiysnsflw*sfnhsptrfr*ilglvr*inans*isktyf
nftarryhlwlyg*trs**cftksrsrhiyyki**kkswsiwyclywc*nassn*tlfgs
tk*yccrkenfp*l
Translated Amino Acid sequence (All Frames) 
Frame A:
irf*iiisyifnfiylfiylfiyylfiylfisk**lllflyyhkkk---

---fr*cyhhx*rvmhpihsllspmnvngrvvlvyy*krmlsmvnwkslglnssipfkdi
s*lplnkil*dqnvhslpmi*nifklislvivqsftnkisinfgfgsvnqcklldikdif
qlygkkvsfmviwvdkklmmlykikiqahll*dlvkeilvnlvllilvlkcqlelniiwf
nqmillpqrklslt

Frame B:
FVSKLLYHIFLILFIYLFIYLFIIYLFIYLLVNSNYCYFCIIIKKK---

---LDNVTTTXRE*ciqsircyhq*msmgg*cwciiekgcfrwsignhlgsihqypsktf
lnch*trscktktstlfl*feiysnsflw*sfnhsptrfr*ilglvr*inans*isktyf
nftarryhlwlyg*trs**cftksrsrhiyyki**kkswsiwyclywc*nassn*tlfgs
tk*yccrkenfp*l

Frame C:
sflnyyiiyf*fylfiylfiyllfiylfiy**iviiaifvls*kk---

---*imlpppvesdasnpfvvitnecqwegsagvllkkdafdgqleitwaqfintlqrhf
liatkqdpvrpkrplssydlkyiqthffgnrsiihqqdfdkfwvwfgksmqtlryqrhis
tlrqegiiygymgrqevndalqnqdpgtfiirfsernpgqfgiayigvemparikhylvq
pndtaaakktfpd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE644 (CHE644Q) /CSM/CH/CHE6-B/CHE644Q.Seq.d/                       1132   0.0
VHO422 (VHO422Q) /CSM/VH/VHO4-A/VHO422Q.Seq.d/                       1080   0.0
SFK685 (SFK685Q) /CSM/SF/SFK6-D/SFK685Q.Seq.d/                       1066   0.0
CHJ247 (CHJ247Q) /CSM/CH/CHJ2-B/CHJ247Q.Seq.d/                       1005   0.0
AHE566 (AHE566Q) /CSM/AH/AHE5-C/AHE566Q.Seq.d/                        989   0.0
CHE665 (CHE665Q) /CSM/CH/CHE6-C/CHE665Q.Seq.d/                        985   0.0
CHI880 (CHI880Q) /CSM/CH/CHI8-D/CHI880Q.Seq.d/                        983   0.0
VHK319 (VHK319Q) /CSM/VH/VHK3-A/VHK319Q.Seq.d/                        969   0.0
SHK333 (SHK333Q) /CSM/SH/SHK3-B/SHK333Q.Seq.d/                        946   0.0
SFJ662 (SFJ662Q) /CSM/SF/SFJ6-C/SFJ662Q.Seq.d/                        916   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y13097|Y13097.1 Dictyostelium discoideum dstA mRNA for STATa protein, first finger  stage.  1084   0.0    2
AJ581661|AJ581661.1 Dictyostelium discoideum partial dstB gene for Dd-STATb protein,  genomic RNA.    48   1e-08  3
AJ301670|AJ301670.1 Dictyostelium discoideum mRNA for STATc transcriptional repressor  (dstC gene).    46   1e-06  3
AC101371|AC101371.1 Mus musculus clone RP23-117B13, LOW-PASS SEQUENCE SAMPLING.    38   0.58   2
AY186735|AY186735.1 Lycopersicon esculentum SP3D (SP3D) gene, complete cds.    46   0.79   1
AC129815|AC129815.4 Rattus norvegicus clone CH230-526N11, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42   1.2    3
AP004824|AP004824.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 3/10.    36   1.6    6
AC014843|AC014843.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    38   1.8    3
AC093316|AC093316.28 Mus musculus chromosome 10 clone rp23-202i7 strain C57BL/6J, complete sequence.    38   1.9    6
AC138293|AC138293.5 Mus musculus chromosome 18 clone RP23-33P24 map 18, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    44   3.1    1
dna update 2004. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O00910) RecName: Full=Signal transducer and activator of transc...   378   e-104
(Q70GP4) RecName: Full=Signal transducer and activator of transc...   220   3e-56
(Q54BD4) RecName: Full=Signal transducer and activator of transc...   215   9e-55
AJ301670_1(AJ301670|pid:none) Dictyostelium discoideum mRNA for ...   215   9e-55
AC116305_84(AC116305|pid:none) Dictyostelium discoideum chromoso...   150   5e-35
BC068769_1(BC068769|pid:none) Xenopus laevis hypothetical protei...    60   6e-08
BC170126_1(BC170126|pid:none) Xenopus laevis cDNA clone MGC:1968...    58   2e-07
AF382190_1(AF382190|pid:none) Xenopus laevis STAT5 mRNA, complet...    58   2e-07
(P51692) RecName: Full=Signal transducer and activator of transc...    57   5e-07
AB208920_1(AB208920|pid:none) Homo sapiens mRNA for signal trans...    57   5e-07
protein update 2009. 3.31
PSORT 

 psg: 0.98  gvh: 0.51  alm: 0.15  top: 0.50  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.56  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHE644 is nuc
5' end seq. ID CHE644F
5' end seq. 
>CHE644F.Seq
ATTCGTTTCTAAATTATTATATCATATATTTTTAATTTTATTTATTTATTTATTTATTTA
TTTATTTATTATTTATTTATTTATTTATTTATTAGTAAATAGTAATTATTGCTATTTTTG
TATTATCATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 149
3' end seq. ID CHE644Z
3' end seq. 
>CHE644Z.Seq
NNNNNNNNNNTTTAGATAATGTTACCACCACCNGTAGAGAGTGATGCATCCAATCCATTC
GTTGTTATCACCAATGAATGTCAATGGGAGGGTAGTGCTGGTGTATTATTGAAAAAGGAT
GCTTTCGATGGTCAATTGGAAATCACTTGGGCTCAATTCATCAATACCCTTCAAAGACAT
TTCTTAATTGCCACTAAACAAGATCCTGTAAGACCAAAACGTCCACTCTCTTCCTATGAT
TTGAAATATATTCAAACTCATTTCTTTGGTAATCGTTCAATCATTCACCAACAAGATTTC
GATAAATTTTGGGTTTGGTTCGGTAAATCAATGCAAACTCTTAGATATCAAAGACATATT
TCAACTTTACGGCAAGAAGGTATCATTTATGGTTATATGGGTAGACAAGAAGTTAATGAT
GCTTTACAAAATCAAGATCCAGGCACATTTATTATAAGATTTAGTGAAAGAAATCCTGGT
CAATTTGGTATTGCTTATATTGGTGTTGAAATGCCAGCTCGAATTAAACATTATTTGGTT
CAACCAAATGATACTGCTGCCGCAAAGAAAACTTTCCCTGACTT
Length of 3' end seq. 584
Connected seq. ID CHE644P
Connected seq. 
>CHE644P.Seq
ATTCGTTTCTAAATTATTATATCATATATTTTTAATTTTATTTATTTATTTATTTATTTA
TTTATTTATTATTTATTTATTTATTTATTTATTAGTAAATAGTAATTATTGCTATTTTTG
TATTATCATAAAAAAAAAA----------TTTAGATAATGTTACCACCACCNGTAGAGAG
TGATGCATCCAATCCATTCGTTGTTATCACCAATGAATGTCAATGGGAGGGTAGTGCTGG
TGTATTATTGAAAAAGGATGCTTTCGATGGTCAATTGGAAATCACTTGGGCTCAATTCAT
CAATACCCTTCAAAGACATTTCTTAATTGCCACTAAACAAGATCCTGTAAGACCAAAACG
TCCACTCTCTTCCTATGATTTGAAATATATTCAAACTCATTTCTTTGGTAATCGTTCAAT
CATTCACCAACAAGATTTCGATAAATTTTGGGTTTGGTTCGGTAAATCAATGCAAACTCT
TAGATATCAAAGACATATTTCAACTTTACGGCAAGAAGGTATCATTTATGGTTATATGGG
TAGACAAGAAGTTAATGATGCTTTACAAAATCAAGATCCAGGCACATTTATTATAAGATT
TAGTGAAAGAAATCCTGGTCAATTTGGTATTGCTTATATTGGTGTTGAAATGCCAGCTCG
AATTAAACATTATTTGGTTCAACCAAATGATACTGCTGCCGCAAAGAAAACTTTCCCTGA
CTT
Length of connected seq. 713
Full length Seq ID -
Full length Seq. -
Length of full length seq. -