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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE637
Library CH
(Link to library)
Clone ID CHE637
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHE637P
(Link to Original site)
Representative DNA sequence 
>CHE637 (CHE637Q) /CSM/CH/CHE6-B/CHE637Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAAAT
TCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGA
TGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAA
ACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAAT
CCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACA
AAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---GSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFL
DENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQ
IVEQLKVIKEFQRQDQQKKQKNSTRERCCLLE*c*ksst*igc*ig*k**tresr*efss
rettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sxlxflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---mvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf
*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnn
kslnnlklsknfkdkinkrnkkiqqendavylsdvekaqleldaelaknnkqenqdenlv
qekqqspdqiknqlkniqheqqiqeqqdklnqeknqqlleqeqnqk*fnhxfxf*kt

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclf
r*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*tt
nr*tt*syqrisktrstketkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*f
krnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliixxlfkk

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---GSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFL
DENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQ
IVEQLKVIKEFQRQDQQKKQKNSTRERCCLLE*c*ksst*igc*ig*k**tresr*efss
rettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sxlxflkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE637 (CHE637Q) /CSM/CH/CHE6-B/CHE637Q.Seq.d/                        624   e-178
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        615   e-175
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        615   e-175
SHL728 (SHL728Q) /CSM/SH/SHL7-B/SHL728Q.Seq.d/                        615   e-175
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        605   e-172
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        605   e-172
SHL709 (SHL709Q) /CSM/SH/SHL7-A/SHL709Q.Seq.d/                        605   e-172
CHF560 (CHF560Q) /CSM/CH/CHF5-C/CHF560Q.Seq.d/                        605   e-172
CFC704 (CFC704Q) /CSM/CF/CFC7-A/CFC704Q.Seq.d/                        597   e-169
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        593   e-168
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   591   0.0    7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-30  16
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   3e-14  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   4e-10  20
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   9e-09  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   3e-08  21
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   4e-08  19
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   4e-08  16
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   7e-08  15
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of...    34   4e-07  16
dna update 2004. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   164   4e-39
AE014186_35(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    39   0.19
AM910992_104(AM910992|pid:none) Plasmodium knowlesi strain H chr...    38   0.43
AE014187_250(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.74
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    36   1.6
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    36   1.6
AE014188_26(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    36   1.6
CR382401_49(CR382401|pid:none) Plasmodium falciparum chromosome ...    36   1.6
AM910993_181(AM910993|pid:none) Plasmodium knowlesi strain H chr...    36   1.6
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.2
protein update 2009. 3.31
PSORT 

 psg: 0.68  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 24.0 %: plasma membrane
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial

>> prediction for CHE637 is nuc
5' end seq. ID CHE637F
5' end seq. 
>CHE637F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHE637Z
3' end seq. 
>CHE637Z.Seq
NNNNNNNNNNATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAAT
GTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAA
CGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTT
TTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTC
TTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAG
AATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAA
CAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAA
CAAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACT
TGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGT
TCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGA
ACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGA
ACAAGAACAAAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAACT
Length of 3' end seq. 712
Connected seq. ID CHE637P
Connected seq. 
>CHE637P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-ATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAAAT
TCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGA
TGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAA
ACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAAT
CCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACA
AAATCAAAAATAATTTAATCATTNCTTTNCTTTTTAAAAAACT
Length of connected seq. 813
Full length Seq ID -
Full length Seq. -
Length of full length seq. -