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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE636
Library CH
(Link to library)
Clone ID CHE636
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11696-1
Original site URL
Representative seq. ID CHE636P
(Link to Original site)
Representative DNA sequence 
>CHE636 (CHE636Q) /CSM/CH/CHE6-B/CHE636Q.Seq.d/
ATAATTATAAAAATTACTTTTAAAAAATATCCAATAGTAGTACGAAAATATAACATTACA
TTATATAATTACAAAAATAAAATAAATAAAAATTGTAAAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAANGGGNAANAAAAAAAAAANGGNAAANNAAAAXXXXXXXXXXCATTGT
AAAGCNAACTGTNNTTCAAAGTAANCNTTNTGAATGGTAGTATCAGTATNACNGNATANN
ATGGTTTACAATTCACACTTCAATATATACCTTAACAATGGTTATAT
sequence update 2002.10.25
Translated Amino Acid sequence 
IIIKITFKKYPIVVRKYNITLYNYKNKINKNCKTKKKKKKKKKKXGXKKKXXXX---

---IVKXTVXQSXXXEW*yqyxxixwftihtsiytltmvi
Translated Amino Acid sequence (All Frames) 
Frame A:
IIIKITFKKYPIVVRKYNITLYNYKNKINKNCKTKKKKKKKKKKXGXKKKXXXX---

---hckancxsk*xx*mvvsvxxxxmvynshfniylnngy

Frame B:
*l*klllkniq**yenitlhyiitkik*ikivkpkkkkkkkkkkxxxkkkxxxk---

---IVKXTVXQSXXXEW*yqyxxixwftihtsiytltmvi

Frame C:
nyknyf*kisnsstki*hyii*lqk*nk*kl*nqkkkkkkkkkxgxxkkxgkxk---

---l*sxlxfkvxxxngsisxtxxxglqftlqyip*qwly
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE636 (CHE636Q) /CSM/CH/CHE6-B/CHE636Q.Seq.d/                        159   3e-38
CHS194 (CHS194Q) /CSM/CH/CHS1-D/CHS194Q.Seq.d/                        143   2e-33
CHQ525 (CHQ525Q) /CSM/CH/CHQ5-B/CHQ525Q.Seq.d/                        143   2e-33
CHP787 (CHP787Q) /CSM/CH/CHP7-D/CHP787Q.Seq.d/                        143   2e-33
CHP722 (CHP722Q) /CSM/CH/CHP7-A/CHP722Q.Seq.d/                        143   2e-33
CHL639 (CHL639Q) /CSM/CH/CHL6-B/CHL639Q.Seq.d/                        143   2e-33
CHK617 (CHK617Q) /CSM/CH/CHK6-A/CHK617Q.Seq.d/                        143   2e-33
CHI812 (CHI812Q) /CSM/CH/CHI8-A/CHI812Q.Seq.d/                        143   2e-33
CHR508 (CHR508Q) /CSM/CH/CHR5-A/CHR508Q.Seq.d/                        139   3e-32
CHQ326 (CHQ326Q) /CSM/CH/CHQ3-B/CHQ326Q.Seq.d/                        139   3e-32
own update 2002. 9.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR667281|CR667281.1 Tetraodon nigroviridis full-length cDNA.       34   0.018  3
AC121038|AC121038.3 Rattus norvegicus clone CH230-499M13, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    40   0.027  2
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.16   11
AC011779|AC011779.3 Homo sapiens clone RP11-15H22, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40   0.19   3
AC149612|AC149612.1 Ictalurus punctatus clone CH212-98M5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38   0.21   2
CR478288|CR478288.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.24   6
AE017202|AE017202.1 Lactobacillus johnsonii NCC 533, section 3 of 7 of the complete genome.    46   0.30   1
AC118895|AC118895.8 Rattus norvegicus clone CH230-505F11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    46   0.30   1
AX926713|AX926713.1 Sequence 3 from Patent WO03084989.             46   0.30   1
AC149544|AC149544.1 Populus balsamifera subsp. trichocarpa clone Pop1-69J1, complete sequence.    34   0.46   6
dna update 2004. 9.25
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 225,628,060
protein update 2009. 3.31
PSORT 

 psg: 0.61  gvh: 0.20  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.65  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHE636 is nuc
5' end seq. ID CHE636F
5' end seq. 
>CHE636F.Seq
ATAATTATAAAAATTACTTTTAAAAAATATCCAATAGTAGTACGAAAATATAACATTACA
TTATATAATTACAAAAATAAAATAAATAAAAATTGTAAAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAANGGGNAANAAAAAAAAAANGGNAAANNAAAANNNNNNNNNN
Length of 5' end seq. 174
3' end seq. ID CHE636Z
3' end seq. 
>CHE636Z.Seq
NNNNNNNNNNCATTGTAAAGCNAACTGTNNTTCAAAGTAANCNTTNTGAATGGTAGTATC
AGTATNACNGNATANNATGGTTTACAATTCACACTTCAATATATACCTTAACAATGGTTA
TAT
Length of 3' end seq. 123
Connected seq. ID CHE636P
Connected seq. 
>CHE636P.Seq
ATAATTATAAAAATTACTTTTAAAAAATATCCAATAGTAGTACGAAAATATAACATTACA
TTATATAATTACAAAAATAAAATAAATAAAAATTGTAAAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAANGGGNAANAAAAAAAAAANGGNAAANNAAAA----------CATTGT
AAAGCNAACTGTNNTTCAAAGTAANCNTTNTGAATGGTAGTATCAGTATNACNGNATANN
ATGGTTTACAATTCACACTTCAATATATACCTTAACAATGGTTATAT
Length of connected seq. 277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -