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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE619
Library CH
(Link to library)
Clone ID CHE619
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHE619P
(Link to Original site)
Representative DNA sequence 
>CHE619 (CHE619Q) /CSM/CH/CHE6-A/CHE619Q.Seq.d/
AAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXX
XXXXXXTGCTCAATGTCCAACTGGTTATGTTTGTGTCGCTCAAAATAATGTAGCTGTTTG
TTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGACTCGTCTGCCCTTGGTTCAAC
CTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAGCTCTGCCTCTGGTTCTTCTGC
TGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAG
CTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTC
TTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTC
TGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGC
AACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCATA
sequence update 2002.10.25
Translated Amino Acid sequence 
kifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK--
-

---AQCPTGYVCVAQNNVAVCLPRPTTTTGSTSDSSALGSTSESSASGSSAVSSSASGSS
AASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSS
SAPSSSASSSSASSSSASSAATTAATTIATTAATTTA
Translated Amino Acid sequence (All Frames) 
Frame A:
kniqlsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk--
-

---csmsnwlclcrsk*csclfaktyhyhr*hi*lvcpwfnl*klclwflccfklclwff
ccfiftiiiccklfsificcklfsificcklfpificiiklfpificiiklcpificiik
lcsificiificiificiicsnyscnyncnyscnynci

Frame B:
kifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK--
-

---AQCPTGYVCVAQNNVAVCLPRPTTTTGSTSDSSALGSTSESSASGSSAVSSSASGSS
AASSSPSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSS
SAPSSSASSSSASSSSASSAATTAATTIATTAATTTA

Frame C:
kystq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk--
-

---lnvqlvmfvslkim*lfvcqdlplppvahltrlplvqplkalplvpllfqalplvll
llhlhhhhllqallhlhllqallhlhllqalphlhlhhqalphlhlhhqalphlhlhhqa
llhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlqlqlh
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA681 (SLA681Q) /CSM/SL/SLA6-D/SLA681Q.Seq.d/                        676   0.0
SFJ657 (SFJ657Q) /CSM/SF/SFJ6-C/SFJ657Q.Seq.d/                        676   0.0
CHS234 (CHS234Q) /CSM/CH/CHS2-B/CHS234Q.Seq.d/                        676   0.0
CHQ729 (CHQ729Q) /CSM/CH/CHQ7-B/CHQ729Q.Seq.d/                        676   0.0
CHP677 (CHP677Q) /CSM/CH/CHP6-D/CHP677Q.Seq.d/                        676   0.0
CHL411 (CHL411Q) /CSM/CH/CHL4-A/CHL411Q.Seq.d/                        676   0.0
CHL207 (CHL207Q) /CSM/CH/CHL2-A/CHL207Q.Seq.d/                        676   0.0
CHG520 (CHG520Q) /CSM/CH/CHG5-A/CHG520Q.Seq.d/                        676   0.0
CHE870 (CHE870Q) /CSM/CH/CHE8-C/CHE870Q.Seq.d/                        676   0.0
CHE619 (CHE619Q) /CSM/CH/CHE6-A/CHE619Q.Seq.d/                        676   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   668   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   676   0.0    7
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    52   5e-04  5
BQ867133|BQ867133.1 QGC9O01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC9O01, mRNA sequence.    36   7e-04  3
BQ858872|BQ858872.1 QGC11H15.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC11H15, mRNA sequence.    32   7e-04  3
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    54   0.003  1
AC068430|AC068430.2 Homo sapiens chromosome 1 clone RP11-199C18 map 1, LOW-PASS SEQUENCE SAMPLING.    30   0.006  3
AZ574185|AZ574185.1 325PvG08 Pv MBN #30 Plasmodium vivax genomic 3', DNA sequence.    38   0.006  2
AL050342|AL050342.42 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13.    30   0.006  3
BU494840|BU494840.1 PfESToab68d10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96230 O96230 ATP-DEPT. ACYL-COA SYNTHETASE ;, mRNA sequence.    30   0.007  5
dna update 2004. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    50   5e-05
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    46   8e-04
protein update 2008.10.28
PSORT 

 psg: 0.86  gvh: 0.55  alm: 0.44  top: 0.27  tms: 0.00  mit: 0.34  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHE619 is exc
5' end seq. ID CHE619F
5' end seq. 
>CHE619F.Seq
AAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 186
3' end seq. ID CHE619Z
3' end seq. 
>CHE619Z.Seq
NNNNNNNNNNTGCTCAATGTCCAACTGGTTATGTTTGTGTCGCTCAAAATAATGTAGCTG
TTTGTTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGACTCGTCTGCCCTTGGTT
CAACCTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAGCTCTGCCTCTGGTTCTT
CTGCTGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTG
CAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAA
GCTCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAA
GCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTG
CAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCATA
Length of 3' end seq. 475
Connected seq. ID CHE619P
Connected seq. 
>CHE619P.Seq
AAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----
------TGCTCAATGTCCAACTGGTTATGTTTGTGTCGCTCAAAATAATGTAGCTGTTTG
TTTGCCAAGACCTACCACTACCACCGGTAGCACATCTGACTCGTCTGCCCTTGGTTCAAC
CTCTGAAAGCTCTGCCTCTGGTTCCTCTGCTGTTTCAAGCTCTGCCTCTGGTTCTTCTGC
TGCTTCATCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCAAG
CTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGCTC
TTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGCTC
TGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCAGC
AACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCATA
Length of connected seq. 641
Full length Seq ID -
Full length Seq. -
Length of full length seq. -