CHE610
Library CH
(Link to library)
Clone ID CHE610
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15897-1
Original site URL
Representative seq. ID CHE610P
(Link to Original site)
Representative DNA sequence
>CHE610 (CHE610Q) /CSM/CH/CHE6-A/CHE610Q.Seq.d/
AGCATGTTCAATATTGAAAGTAGCGGCTAAACCAGTATTATGTGGGAATAAAGTTGCTTT
GTGAACATAATTTGCACCATGTACTGAATCTAAACCATAAATCATTGGAATCTTATTTGG
ACTACCTTCGATAACAATGGTTTGAATAGTATTAATCATATCTAACCAAACACTACTATT
AATATGATGAATATCACCTGCTAAACCACCTGATACTGGTGAATTTAAATATGATCCAAT
ATAATAAGTTTTAGCATAATATGCTAATGTTGTTTCATTAATTGTAATTGTATTTGGTGA
TGTTAATGTTGTAATATCCAATTGAGTCATTTGACCAATTTTTTCAGTGATTGACATTTT
TGACATTAAATTATCAACAAAAGTATCTCTGGCAGACATGAAATTAATATTTTCTTGATT
TAATTGTTTCTTTGGATAAATTTGACTATACTCTAATTTGAGTTCTCTTTTATTTCCAAA
AGTACGTGGTTTTTCAATGACTTCAGCTTCTTCACCTCCAACAATGCTTACTCTAATTGA
ACTTCCATATGTTGAACTTATTAATAAATTCACTATCAACAATGACAGTAAAAATAAACT
TTTAATAGTTTTCATCTTTTTATATATATATATAAAATTGAATTTAATTAAATATTCTTT
ATATATATATATGTATATGTATATTCCAATATTTAAAAATGATTAAAAAAAAXXXXXXXX
XXAGCATGTTCAATATTGAAAGTAGCGGCTAAACCAGTATTATGTGGGAATAAAGTTGCT
TTGTGAACATAATTTGCACCATGTACTGAATCTAAACCATAAATCATTGGAATCTTATTT
GGACTACCTTCGATAACAATGGTTTGAATAGTATTAATCATATCTAACCAAACACTACTA
TTAATATGATGAATATCACCTGCTAAACCACCTGATACTGGTGAATTTAAATATGATCCA
ATATAATAAGTTTTAGCATAATATGCTAATGTTGTTTCATTAATTGTAATTGTATTTGGT
GATGTTAATGTTGTAATATCCAATTGAGTCATTTGACCAATTTTTTCAGTGATTGACATT
TTTGACATTAAATTATCAACAAAAGTATCTCTGGCAGACATGAAATTAATATTTTCTTGA
TTTAATTGTTTCTTTGGATAAATTTGACTATACTCTAATTTGAGTTCTCTTTTATTTCCA
AAAGTACGTGGTTTTTCAATGACTTCAGCTTCTTCACCTCCAACAATGCTTACTCTAATT
GAACTTCCATATGTTGAACTTATTAATAAATTCACTATCAACAATGACAGTAAAAATAAA
CTTTTAATAGTTTTCATCTTTTTATATATATATATAAAATTGAATTTAATTAAATATTCT
TTATATATATATATGTATATGTATATTCCAATATTTAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
hvqy*k*rlnqyyvgikllcehnlhhvlnlnhkslesyldylr*qwfe*y*syltkhyy*
ydeyhllnhlilvnlnmiqynkf*hnmlmlfh*l*lylvmlml*ypiesfdqffq*ltfl
tlnyqqkylwqt*n*yfldlivsldkfdytli*vlfyfqkyvvfq*lqllhlqqcll*ln
fhmlnllinslstmtvkinf**fssfyiyi*n*i*LNILYIYICICIFQYLKMIKK---

---ACSILKVAAKPVLCGNKVAL*t*fapcteskp*iigilfglpsitmv*ivliisnqt
llli**ispakppdtgefkydpi**vla*yanvvslivivfgdvnvvisn*vi*pifsvi
difdiklstkvsladmklifs*fncffg*i*lysnlssllfpkvrgfsmtsasspptmlt
lielpyvelinkftinndsknkllivfiflyiyiklnlikyslyiymymyipifk


Translated Amino Acid sequence (All Frames)
Frame A:
smfniessg*tsimwe*scfvniictmy*i*tinhwnliwttfdnnglnsinhi*pntti
nmmnitc*tt*yw*i*i*sniisfsiic*ccfincnciw*c*ccniqlshltnffsd*hf
*h*iinksisgrheinifli*lflwinltil*fefsfiskstwffndfsfftsnnaysn*
tsic*ty**ihyqq*q*k*tfnsfhlfiyiykiefn*iffiyiyvyvysni*k*lkk---

---smfniessg*tsimwe*scfvniictmy*i*tinhwnliwttfdnnglnsinhi*pn
ttinmmnitc*tt*yw*i*i*sniisfsiic*ccfincnciw*c*ccniqlshltnffsd
*hf*h*iinksisgrheinifli*lflwinltil*fefsfiskstwffndfsfftsnnay
sn*tsic*ty**ihyqq*q*k*tfnsfhlfiyiykiefn*iffiyiyvyvysni*k

Frame B:
acsilkvaakpvlcgnkval*t*fapcteskp*iigilfglpsitmv*ivliisnqtlll
i**ispakppdtgefkydpi**vla*yanvvslivivfgdvnvvisn*vi*pifsvidif
diklstkvsladmklifs*fncffg*i*lysnlssllfpkvrgfsmtsasspptmltlie
lpyvelinkftinndsknkllivfiflyiyiklnlikyslyiymymyipifknd*kk---

---ACSILKVAAKPVLCGNKVAL*t*fapcteskp*iigilfglpsitmv*ivliisnqt
llli**ispakppdtgefkydpi**vla*yanvvslivivfgdvnvvisn*vi*pifsvi
difdiklstkvsladmklifs*fncffg*i*lysnlssllfpkvrgfsmtsasspptmlt
lielpyvelinkftinndsknkllivfiflyiyiklnlikyslyiymymyipifk

Frame C:
hvqy*k*rlnqyyvgikllcehnlhhvlnlnhkslesyldylr*qwfe*y*syltkhyy*
ydeyhllnhlilvnlnmiqynkf*hnmlmlfh*l*lylvmlml*ypiesfdqffq*ltfl
tlnyqqkylwqt*n*yfldlivsldkfdytli*vlfyfqkyvvfq*lqllhlqqcll*ln
fhmlnllinslstmtvkinf**fssfyiyi*n*i*LNILYIYICICIFQYLKMIKK---

---hvqy*k*rlnqyyvgikllcehnlhhvlnlnhkslesyldylr*qwfe*y*syltkh
yy*ydeyhllnhlilvnlnmiqynkf*hnmlmlfh*l*lylvmlml*ypiesfdqffq*l
tfltlnyqqkylwqt*n*yfldlivsldkfdytli*vlfyfqkyvvfq*lqllhlqqcll
*lnfhmlnllinslstmtvkinf**fssfyiyi*n*i*lnilyiyicicifqylk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHK201 (VHK201Q) /CSM/VH/VHK2-A/VHK201Q.Seq.d/ 1229 0.0
VHC215 (VHC215Q) /CSM/VH/VHC2-A/VHC215Q.Seq.d/ 1229 0.0
VHB608 (VHB608Q) /CSM/VH/VHB6-A/VHB608Q.Seq.d/ 1229 0.0
VHA656 (VHA656Q) /CSM/VH/VHA6-C/VHA656Q.Seq.d/ 1229 0.0
CHE610 (CHE610Q) /CSM/CH/CHE6-A/CHE610Q.Seq.d/ 1229 0.0
VHO350 (VHO350Q) /CSM/VH/VHO3-C/VHO350Q.Seq.d/ 1227 0.0
VHE215 (VHE215Q) /CSM/VH/VHE2-A/VHE215Q.Seq.d/ 1221 0.0
CHP639 (CHP639Q) /CSM/CH/CHP6-B/CHP639Q.Seq.d/ 1219 0.0
CHL451 (CHL451Q) /CSM/CH/CHL4-C/CHL451Q.Seq.d/ 1209 0.0
VHQ110 (VHQ110Q) /CSM/VH/VHQ1-A/VHQ110Q.Seq.d/ 1181 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L21014|L21014.1 Dictyostelium discoideum beta-glucosidase mRNA, complete cds. 1229 0.0 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 1e-07 25
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3. 42 1e-06 17
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 44 3e-06 18
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 4e-06 18
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 32 1e-05 21
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 2e-05 21
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 34 3e-05 20
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 4e-05 19
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 36 2e-04 25
dna update 2004. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma... 370 e-101
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 89 4e-16
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 89 4e-16
AY335818_1(AY335818|pid:none) Gossypium hirsutum beta-D-glucosid... 87 2e-15
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 87 2e-15
EF146977_1(EF146977|pid:none) Populus trichocarpa clone WS01225_... 85 7e-15
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 85 7e-15
AL133292_9(AL133292|pid:none) Arabidopsis thaliana DNA chromosom... 84 2e-14
AJ006501_1(AJ006501|pid:none) Tropaeolum majus mRNA for beta-D-g... 82 4e-14
AC091811_16(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ... 82 6e-14
protein update 2009. 3.31
PSORT

psg: 0.96 gvh: 0.40 alm: 0.30 top: 0.80 tms: 0.07 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.38 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHE610 is cyt

5' end seq. ID CHE610F
5' end seq.
>CHE610F.Seq
AGCATGTTCAATATTGAAAGTAGCGGCTAAACCAGTATTATGTGGGAATAAAGTTGCTTT
GTGAACATAATTTGCACCATGTACTGAATCTAAACCATAAATCATTGGAATCTTATTTGG
ACTACCTTCGATAACAATGGTTTGAATAGTATTAATCATATCTAACCAAACACTACTATT
AATATGATGAATATCACCTGCTAAACCACCTGATACTGGTGAATTTAAATATGATCCAAT
ATAATAAGTTTTAGCATAATATGCTAATGTTGTTTCATTAATTGTAATTGTATTTGGTGA
TGTTAATGTTGTAATATCCAATTGAGTCATTTGACCAATTTTTTCAGTGATTGACATTTT
TGACATTAAATTATCAACAAAAGTATCTCTGGCAGACATGAAATTAATATTTTCTTGATT
TAATTGTTTCTTTGGATAAATTTGACTATACTCTAATTTGAGTTCTCTTTTATTTCCAAA
AGTACGTGGTTTTTCAATGACTTCAGCTTCTTCACCTCCAACAATGCTTACTCTAATTGA
ACTTCCATATGTTGAACTTATTAATAAATTCACTATCAACAATGACAGTAAAAATAAACT
TTTAATAGTTTTCATCTTTTTATATATATATATAAAATTGAATTTAATTAAATATTCTTT
ATATATATATATGTATATGTATATTCCAATATTTAAAAATGATTAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 722
3' end seq. ID CHE610Z
3' end seq.
>CHE610Z.Seq
NNNNNNNNNNAGCATGTTCAATATTGAAAGTAGCGGCTAAACCAGTATTATGTGGGAATA
AAGTTGCTTTGTGAACATAATTTGCACCATGTACTGAATCTAAACCATAAATCATTGGAA
TCTTATTTGGACTACCTTCGATAACAATGGTTTGAATAGTATTAATCATATCTAACCAAA
CACTACTATTAATATGATGAATATCACCTGCTAAACCACCTGATACTGGTGAATTTAAAT
ATGATCCAATATAATAAGTTTTAGCATAATATGCTAATGTTGTTTCATTAATTGTAATTG
TATTTGGTGATGTTAATGTTGTAATATCCAATTGAGTCATTTGACCAATTTTTTCAGTGA
TTGACATTTTTGACATTAAATTATCAACAAAAGTATCTCTGGCAGACATGAAATTAATAT
TTTCTTGATTTAATTGTTTCTTTGGATAAATTTGACTATACTCTAATTTGAGTTCTCTTT
TATTTCCAAAAGTACGTGGTTTTTCAATGACTTCAGCTTCTTCACCTCCAACAATGCTTA
CTCTAATTGAACTTCCATATGTTGAACTTATTAATAAATTCACTATCAACAATGACAGTA
AAAATAAACTTTTAATAGTTTTCATCTTTTTATATATATATATAAAATTGAATTTAATTA
AATATTCTTTATATATATATATGTATATGTATATTCCAATATTTAAAAA
Length of 3' end seq. 709
Connected seq. ID CHE610P
Connected seq.
>CHE610P.Seq
AGCATGTTCAATATTGAAAGTAGCGGCTAAACCAGTATTATGTGGGAATAAAGTTGCTTT
GTGAACATAATTTGCACCATGTACTGAATCTAAACCATAAATCATTGGAATCTTATTTGG
ACTACCTTCGATAACAATGGTTTGAATAGTATTAATCATATCTAACCAAACACTACTATT
AATATGATGAATATCACCTGCTAAACCACCTGATACTGGTGAATTTAAATATGATCCAAT
ATAATAAGTTTTAGCATAATATGCTAATGTTGTTTCATTAATTGTAATTGTATTTGGTGA
TGTTAATGTTGTAATATCCAATTGAGTCATTTGACCAATTTTTTCAGTGATTGACATTTT
TGACATTAAATTATCAACAAAAGTATCTCTGGCAGACATGAAATTAATATTTTCTTGATT
TAATTGTTTCTTTGGATAAATTTGACTATACTCTAATTTGAGTTCTCTTTTATTTCCAAA
AGTACGTGGTTTTTCAATGACTTCAGCTTCTTCACCTCCAACAATGCTTACTCTAATTGA
ACTTCCATATGTTGAACTTATTAATAAATTCACTATCAACAATGACAGTAAAAATAAACT
TTTAATAGTTTTCATCTTTTTATATATATATATAAAATTGAATTTAATTAAATATTCTTT
ATATATATATATGTATATGTATATTCCAATATTTAAAAATGATTAAAAAAAA--------
--AGCATGTTCAATATTGAAAGTAGCGGCTAAACCAGTATTATGTGGGAATAAAGTTGCT
TTGTGAACATAATTTGCACCATGTACTGAATCTAAACCATAAATCATTGGAATCTTATTT
GGACTACCTTCGATAACAATGGTTTGAATAGTATTAATCATATCTAACCAAACACTACTA
TTAATATGATGAATATCACCTGCTAAACCACCTGATACTGGTGAATTTAAATATGATCCA
ATATAATAAGTTTTAGCATAATATGCTAATGTTGTTTCATTAATTGTAATTGTATTTGGT
GATGTTAATGTTGTAATATCCAATTGAGTCATTTGACCAATTTTTTCAGTGATTGACATT
TTTGACATTAAATTATCAACAAAAGTATCTCTGGCAGACATGAAATTAATATTTTCTTGA
TTTAATTGTTTCTTTGGATAAATTTGACTATACTCTAATTTGAGTTCTCTTTTATTTCCA
AAAGTACGTGGTTTTTCAATGACTTCAGCTTCTTCACCTCCAACAATGCTTACTCTAATT
GAACTTCCATATGTTGAACTTATTAATAAATTCACTATCAACAATGACAGTAAAAATAAA
CTTTTAATAGTTTTCATCTTTTTATATATATATATAAAATTGAATTTAATTAAATATTCT
TTATATATATATATGTATATGTATATTCCAATATTTAAAAA
Length of connected seq. 1411
Full length Seq ID -
Full length Seq. -
Length of full length seq. -