CHE564
Library CH
(Link to library)
Clone ID CHE564
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16513-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHE564 (CHE564Q) /CSM/CH/CHE5-C/CHE564Q.Seq.d/
ATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATTGCAT
TGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATCACCAGACAACT
TTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATGGTGTG
GCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACCAGTTT
CCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCTCTGTA
GTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCACTGCCA
AAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCACGCCA
AAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATCAAATT
TTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGT
GTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAATG
AAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCT
CCAAATATGGTGTCACTGGTTTCCCAACACTCAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LLIIHPQRMKILLFVTLIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCG
HCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTTAK
DYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWC
GHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTL---


Translated Amino Acid sequence (All Frames)
Frame A:
iy**yihke*kyyyllh*lhwhllpyaqqkemllfyhqttliqllmvqklyl*nsmhhgv
aivknlhqilksllthshqfptkl*lpklivtklttklsvvnmmflviqpsksltnqplp
kittvldqlmny*lisiitpkptlk*rkhhqmlliyhhqiliqlf*inqrmf*lnsmhhg
vviaks*cqimkslvtptpmkkmlsspkliamllitkpsapnmvslvsqhs---


Frame B:
finntstkneniiicyincigicclmlsrrkcccfitrql*ysc*wfkncickilctmvw
pl*ktctrf*npc*hirtsfqqscncqs*l*ps*qqssl**i*cfwlsnpqnl*qinhcq
rlqrc*is**iinlyq*srqnqr*skestikcc*fitikf*fscfr*ikecfs*ilctmv
wslqkvnarl*npw*hlrq*krcchrqn*lrcc**qshllqiwchwfpntq---


Frame C:
LLIIHPQRMKILLFVTLIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCG
HCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTTAK
DYNGARSVDELLTYINNHAKTNVKVKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWC
GHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTL---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFM578 (VFM578Q) /CSM/VF/VFM5-D/VFM578Q.Seq.d/ 1378 0.0
VFM308 (VFM308Q) /CSM/VF/VFM3-A/VFM308Q.Seq.d/ 1378 0.0
VFL370 (VFL370Q) /CSM/VF/VFL3-C/VFL370Q.Seq.d/ 1378 0.0
VFL332 (VFL332Q) /CSM/VF/VFL3-B/VFL332Q.Seq.d/ 1378 0.0
VFI769 (VFI769Q) /CSM/VF/VFI7-C/VFI769Q.Seq.d/ 1378 0.0
VFG408 (VFG408Q) /CSM/VF/VFG4-A/VFG408Q.Seq.d/ 1378 0.0
VFF762 (VFF762Q) /CSM/VF/VFF7-C/VFF762Q.Seq.d/ 1378 0.0
VFF615 (VFF615Q) /CSM/VF/VFF6-A/VFF615Q.Seq.d/ 1378 0.0
VFF572 (VFF572Q) /CSM/VF/VFF5-C/VFF572Q.Seq.d/ 1378 0.0
VFD309 (VFD309Q) /CSM/VF/VFD3-A/VFD309Q.Seq.d/ 1378 0.0

own update 2002.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF019112|AF019112.1 Dictyostelium discoideum protein disulfide isomerase (dis) mRNA, complete cds. 1368 0.0 3
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 676 0.0 13
CN640516|CN640516.1 271E09_555565 Douglas-fir cDNA library PmIFG_73-6 Pseudotsuga menziesii var. menziesii cDNA clone Df271-E09 5, mRNA sequence. 74 2e-20 2
BX252003|BX252003.1 Pinus pinaster xylem EST, clone PP058D07. 54 8e-20 4
BQ695627|BQ695627.1 NXPV_030_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_030_G06 5', mRNA sequence. 58 1e-19 3
CV033767|CV033767.1 RTNACL1_36_B08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_36_B08_A029 5', mRNA sequence. 58 3e-19 3
CO366743|CO366743.1 RTK1_29_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_29_F12_A029 5', mRNA sequence. 58 3e-19 3
AU299541|AU299541.2 Cryptomeria japonica mRNA, clone: CM1065, 5' end, expressed in male cone. 64 2e-17 2
CF666748|CF666748.1 RTCNT1_25_H08.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_25_H08_A029 5', mRNA sequence. 52 2e-16 3
CF657686|CF657686.1 tac70d11.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:ERP5_CAEEL Q11067 PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR ;, mRNA sequence. 68 3e-16 2
dna update 2004. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1; S... 457 e-127
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d... 457 e-127
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ... 230 3e-59
DQ222488_1(DQ222488|pid:none) Solanum tuberosum clone 098B03 dis... 224 2e-57
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu... 224 2e-57
AB182629_1(AB182629|pid:none) Glycine max Gm pdis-1a mRNA for pr... 222 9e-57
(O22263) RecName: Full=Probable protein disulfide-isomerase A6; ... 220 4e-56
AK316899_1(AK316899|pid:none) Arabidopsis thaliana AT2G47470 mRN... 220 4e-56
AY570240_1(AY570240|pid:none) Brassica napus var. napus clone BN... 219 5e-56
AC087425_4(AC087425|pid:none) Oryza sativa (japonica cultivar-gr... 219 8e-56
protein update 2009. 3.31
PSORT

psg: 0.98 gvh: 0.77 alm: 0.45 top: 0.10 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for CHE564 is exc

5' end seq. ID CHE564F
5' end seq.
>CHE564F.Seq
ATTTATTAATAATACATCCACAAAGAATGAAAATATTATTATTTGTTACATTAATTGCAT
TGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATCACCAGACAACT
TTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGCACCATGGTGTG
GCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATTCGCACCAGTTT
CCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAAAGCTCTCTGTA
GTAAATATGATGTTTCTGGTTATCCAACCCTCAAAATCTTTGACAAATCAACCACTGCCA
AAGATTACAACGGTGCTAGATCAGTTGATGAATTATTAACTTATATCAATAATCACGCCA
AAACCAACGTTAAAGTAAAGAAAGCACCATCAAATGTTGTTGATTTATCACCATCAAATT
TTGATTCAGTTGTTTTAGATAAATCAAAGAATGTTTTAGTTGAATTCTATGCACCATGGT
GTGGTCATTGCAAAAAGTTAATGCCAGATTATGAAATCCTTGGTAACACCTACGCCAATG
AAAAAGATGTTGTCATCGCCAAAATTGATTGCGATGCTGCTGATAACAAAGCCATCTGCT
CCAAATATGGTGTCACTGGTTTCCCAACACTCAAANNNNNNNNNN
Length of 5' end seq. 705
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -