>CHE555 (CHE555Q) /CSM/CH/CHE5-C/CHE555Q.Seq.d/
XXXXXXXXXXAAATAGTGGGNGCTNCAACNTGAAGCAAATNGTGGTGCTGCAACCNGGTG
CAAAATAGTGGAAACCAATGCCGCTGTAACTGGTNCTGCNAATGGAAATAATGGCGCTGC
AGCTGGAGCAAATAGTGGTGCCGCAACTGNTGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGTGCCGCAACTGNTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAA
TGGAAATAATGGCGNTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGNTGCAAATAGTGG
TGCTGCAAATAGTGGTGNTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAG
TGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGC
AAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATT
ATCGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCC
AACAAGTAGAGCTCCAACGGT

---*WXLQXEANXGAATXCKIVETNAAVTGXANGNNGAAAGANSGAATXANSGAATAANS
GAATXANRGNNAAATGAANGNNGXAAGANSGAATXANSGAANSGXATAANSGAAAGANSG
AATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAATAASTTGRNPRNPT
SRAPT

Frame A:
---nsgxxnxkqxvvlqpgak*wkpmpl*lvlxmeimalqleqivvpqlxqivvpqllqi
vvpqlxqieetmplqlvlqmeimaxqleqivvpqlxqivvlqivvxqllqivvlqleqiv
vlqllqivalqllqvvemvqvvlqtlvq**lqmikmflhyrtlmlqqpqhqlqaetqeiq
qvelqr


Frame B:
---ivgaxt*skxwccnxvqnsgnqcrcnwxcxwk*wrcswsk*wcrnxck*wcrncck*
wcrnxck*rkqcrcnwcckwk*wrcswsk*wcrnxck*wcck*wxcncck*wccswsk*w
ccncck*wrcncckwwkwckwcckpwfnsnsk*skcfsiiel*ccsnrsinyrqkpkksn
k*ssng


Frame C:
---*WXLQXEANXGAATXCKIVETNAAVTGXANGNNGAAAGANSGAATXANSGAATAANS
GAATXANRGNNAAATGAANGNNGXAAGANSGAATXANSGAANSGXATAANSGAAAGANSG
AATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAATAASTTGRNPRNPT
SRAPT

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE555 (CHE555Q) /CSM/CH/CHE5-C/CHE555Q.Seq.d/                       1021   0.0
SHC482 (SHC482Q) /CSM/SH/SHC4-D/SHC482Q.Seq.d/                        973   0.0
SHE343 (SHE343Q) /CSM/SH/SHE3-B/SHE343Q.Seq.d/                        957   0.0
CHK467 (CHK467Q) /CSM/CH/CHK4-C/CHK467Q.Seq.d/                        957   0.0
CHM242 (CHM242Q) /CSM/CH/CHM2-B/CHM242Q.Seq.d/                        955   0.0
SSD263 (SSD263Q) /CSM/SS/SSD2-C/SSD263Q.Seq.d/                        946   0.0
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        946   0.0
SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                        946   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                        946   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                        946   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ576741|BJ576741.1 Ipomoea nil cDNA clone:jm40p11, 3' end, single read.    48   0.13   1
AC006539|AC006539.1 Homo sapiens chromosome 19, BAC 39498 (CIT-B-26L23), complete sequence.    46   0.53   1
CA972875|CA972875.1 AGENCOURT_10764708 Wellcome/CRC_pSK_egg Xenopus laevis cDNA clone IMAGE:6324829 5', mRNA sequence.    46   0.53   1
CK575717|CK575717.1 IST_WI5_8840 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to T06E4.10, mRNA sequence.    34   1.4    3
CQ592356|CQ592356.1 Sequence 20114 from Patent WO0171042.          32   1.7    4
AC139748|AC139748.10 Medicago truncatula clone mth2-15o24, complete sequence.    44   2.1    1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           32   3.3    2
AL382813|AL382813.1 Medicago truncatula EST MtBC10B03R1 : T7 end of clone MtBC10B03 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    32   5.3    2
AL382812|AL382812.1 Medicago truncatula EST MtBC10B03F1 : T3 end of clone MtBC10B03 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    32   5.3    2
AL386978|AL386978.1 Medicago truncatula EST MtBC39A08F1 : T3 end of clone MtBC39A08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    32   5.3    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    67   3e-10

 psg: 0.75  gvh: 0.44  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHE555 is cyt

>CHE555Z.Seq
NNNNNNNNNNAAATAGTGGGNGCTNCAACNTGAAGCAAATNGTGGTGCTGCAACCNGGTG
CAAAATAGTGGAAACCAATGCCGCTGTAACTGGTNCTGCNAATGGAAATAATGGCGCTGC
AGCTGGAGCAAATAGTGGTGCCGCAACTGNTGCAAATAGTGGTGCCGCAACTGCTGCAAA
TAGTGGTGCCGCAACTGNTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAA
TGGAAATAATGGCGNTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGNTGCAAATAGTGG
TGCTGCAAATAGTGGTGNTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAG
TGGTGCTGCAACTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGC
AAGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATT
ATCGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCC
AACAAGTAGAGCTCCAACGGT