>CHE547 (CHE547Q) /CSM/CH/CHE5-B/CHE547Q.Seq.d/
TTGGCCTACTGGAAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAA
AAAACAACAATCACTTTTTTTTTTTGGNTTTTTTNATAAAAAATTXXXXXXXXXXTCATG
AATTGGGCGATCCGTGATGGTACCTATGAATCTTTCAAAGGTTCACCAGCTTCCAAAGGT
ATCCTCCAATTTGATATGTGGAATGTTACACCAAGTTCTCGTTGGAATTGGGCAGAGCTA
AAGGATAACATTGTCAATAAGGGTGGTTTACGTAATTCACTCCTCATTGCACCAATGCCA
ACCGCTTCAACAAGTCAAATCCTTGGTAACAATGAATGCTTTGAACCTTACACTTCCAAC
ATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAACAATTACTCGAA
GATCTCATGGAATTGGGCATTTGGTCACCAGAGATGAAGAATCAAATCGTTGCTGCACGT
GGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTCTATAAAACAGTT
TGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGTGCTTTCATCGAT
CAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAACTCACCTCAATG
CATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTTCGTACTCGTCCT
GCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACTCCAAAACCAGTT
GAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAAAACTCCAAACTNCTTC
A

glleninni*q*tk*INKKKNNNHFFFLXFXIKN---

---MNWAIRDGTYESFKGSPASKGILQFDMWNVTPSSRWNWAELKDNIVNKGGLRNSLLI
APMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQI
VAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAK
LTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIVSQTPKPVENNINSTTPLKTPTKT
PNXF

Frame A:
laywktsiiysnklnk*ikkkttitfffwxfx*ki---

---s*igrsvmvpmnlskvhqlpkvssnlicgmlhqvlvgigqs*ritlsirvvyvihss
lhqcqplqqvkslvtmnalnltlptftvvvf*qvnsqlstnnyskiswnwafghqr*rik
sllhvvpfnpsvaslmi*knsikqfgksvkelssiwllivvlssikvkvsmfsllnqpll
nspqcisthgrkv*rlvctifvlvlplmqfnslliqsylklqnqlkii*tqlhhlklqlk
lqtxs

Frame B:
wptgkhq*yiain*ink*kkkqqslfffgffxkk---

---helgdp*wyl*ifqrftsfqryppi*yvecytkfslelgrakg*hcq*gwft*ftph
ctnanrfnksnpw*q*ml*tlhfqhlqsscfsr*ihncqqtitrrshgighlvtrdeesn
rcctwfhsihrwhp**fertl*nslgnpsknshrygc*swcfhrskskfqcfhc*tnlc*
thlnafllmeerfkdwyvlssysscr*cnsihc*snrisnskts*k*yklnytt*nsn*n
skll

Frame C:
glleninni*q*tk*INKKKNNNHFFFLXFXIKN---

---MNWAIRDGTYESFKGSPASKGILQFDMWNVTPSSRWNWAELKDNIVNKGGLRNSLLI
APMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQI
VAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAK
LTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIVSQTPKPVENNINSTTPLKTPTKT
PNXF

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE547 (CHE547Q) /CSM/CH/CHE5-B/CHE547Q.Seq.d/                       1433   0.0
SHK801 (SHK801Q) /CSM/SH/SHK8-A/SHK801Q.Seq.d/                       1213   0.0
SHC492 (SHC492Q) /CSM/SH/SHC4-D/SHC492Q.Seq.d/                       1189   0.0
AHB637 (AHB637Q) /CSM/AH/AHB6-B/AHB637Q.Seq.d/                       1189   0.0
VHE423 (VHE423Q) /CSM/VH/VHE4-A/VHE423Q.Seq.d/                       1187   0.0
SHL237 (SHL237Q) /CSM/SH/SHL2-B/SHL237Q.Seq.d/                       1183   0.0
CFF294 (CFF294Q) /CSM/CF/CFF2-D/CFF294Q.Seq.d/                       1174   0.0
AHL746 (AHL746Q) /CSM/AH/AHL7-B/AHL746Q.Seq.d/                       1166   0.0
AHF559 (AHF559Q) /CSM/AH/AHF5-C/AHF559Q.Seq.d/                       1156   0.0
AHO819 (AHO819Q) /CSM/AH/AHO8-A/AHO819Q.Seq.d/                       1154   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL440930|AL440930.1 T7 end of clone BD0AA015G01 of library BD0AA from strain CBS 94 of Candida tropicalis.    70   2e-22  4
AJ390500|AJ390500.1 Candida albicans partial mRNA for ribonucleotide reductase large subunit (rnr1 gene).    64   5e-19  4
AX489294|AX489294.1 Sequence 6594 from Patent WO02053728.          64   5e-19  4
M58012|M58012.1 S.cerevisiae ribonucleotide reductase DNA damage-inducible regulatory subunit (DIN1) gene, 5' end.    54   3e-17  5
AW334328|AW334328.1 S33D5 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   8e-17  4
BT008573|BT008573.1 Arabidopsis thaliana clone U09140 putative ribonucleoside-diphosphate reductase large subunit (At2g21790) mRNA, complete cds.    88   2e-15  2
AF092841|AF092841.1 Arabidopsis thaliana ribonucleoside-diphosphate reductase large subunit mRNA, complete cds.    88   2e-15  2
AY035080|AY035080.1 Arabidopsis thaliana putative ribonucleoside-diphosphate reductase large subunit (At2g21790) mRNA, complete cds.    88   2e-15  2
BE500588|BE500588.1 WHE0987-0990_A08_A08ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE0987-0990_A08_A08, mRNA sequence.    88   5e-15  2
BJ814332|BJ814332.1 Caenorhabditis elegans cDNA clone:yk1541d06 : 3' end.    48   7e-15  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   454   e-126
AF092841_1(AF092841|pid:none) Arabidopsis thaliana ribonucleosid...   317   2e-85
AP004240_6(AP004240|pid:none) Oryza sativa Japonica Group genomi...   316   7e-85
AF118785_1(AF118785|pid:none) Glycine max ribonucleotide reducta...   311   2e-83
AM437010_1(AM437010|pid:none) Vitis vinifera contig VV78X108426....   310   5e-83
AF107045_1(AF107045|pid:none) Homo sapiens ribonucleotide reduct...   309   6e-83
AK303394_1(AK303394|pid:none) Homo sapiens cDNA FLJ52525 complet...   309   6e-83
AK297988_1(AK297988|pid:none) Homo sapiens cDNA FLJ51006 complet...   309   6e-83
AK299629_1(AK299629|pid:none) Homo sapiens cDNA FLJ51065 partial...   309   6e-83
(Q5R919) RecName: Full=Ribonucleoside-diphosphate reductase larg...   309   8e-83

 psg: 0.97  gvh: 0.33  alm: 0.46  top: 0.37  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHE547 is cyt

>CHE547F.Seq
TTGGCCTACTGGAAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAA
AAAACAACAATCACTTTTTTTTTTTGGNTTTTTTNATAAAAAATTNNNNNNNNNN

>CHE547Z.Seq
NNNNNNNNNNTCATGAATTGGGCGATCCGTGATGGTACCTATGAATCTTTCAAAGGTTCA
CCAGCTTCCAAAGGTATCCTCCAATTTGATATGTGGAATGTTACACCAAGTTCTCGTTGG
AATTGGGCAGAGCTAAAGGATAACATTGTCAATAAGGGTGGTTTACGTAATTCACTCCTC
ATTGCACCAATGCCAACCGCTTCAACAAGTCAAATCCTTGGTAACAATGAATGCTTTGAA
CCTTACACTTCCAACATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAAC
AAACAATTACTCGAAGATCTCATGGAATTGGGCATTTGGTCACCAGAGATGAAGAATCAA
ATCGTTGCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAA
CTCTATAAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGT
GGTGCTTTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCT
AAACTCACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTAT
CTTCGTACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAA
ACTCCAAAACCAGTTGAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAAA
ACTCCAAACTNCTTCA

>CHE547P.Seq
TTGGCCTACTGGAAAACATCAATAATATATAGCAATAAACTAAATAAATAAATAAAAAAA
AAAACAACAATCACTTTTTTTTTTTGGNTTTTTTNATAAAAAATT----------TCATG
AATTGGGCGATCCGTGATGGTACCTATGAATCTTTCAAAGGTTCACCAGCTTCCAAAGGT
ATCCTCCAATTTGATATGTGGAATGTTACACCAAGTTCTCGTTGGAATTGGGCAGAGCTA
AAGGATAACATTGTCAATAAGGGTGGTTTACGTAATTCACTCCTCATTGCACCAATGCCA
ACCGCTTCAACAAGTCAAATCCTTGGTAACAATGAATGCTTTGAACCTTACACTTCCAAC
ATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAACAATTACTCGAA
GATCTCATGGAATTGGGCATTTGGTCACCAGAGATGAAGAATCAAATCGTTGCTGCACGT
GGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTCTATAAAACAGTT
TGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGTGCTTTCATCGAT
CAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAACTCACCTCAATG
CATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTTCGTACTCGTCCT
GCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACTCCAAAACCAGTT
GAAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAAAACTCCAAACTNCTTC
A