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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE539
Library CH
(Link to library)
Clone ID CHE539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16350-1
Original site URL
Representative seq. ID CHE539P
(Link to Original site)
Representative DNA sequence 
>CHE539 (CHE539Q) /CSM/CH/CHE5-B/CHE539Q.Seq.d/
ATTATACCAATTATTTATAATACAAAATACAAAATAAATCAAATCAAATCAAATCAAAAT
AAAATAAAAAAATGACACTCTTTTCATCGATCTCATCATTGTCAAGTTCAATGACAAGTT
CAAGATCTATTTTCGCTTCATTTGGTAGTGGAACAATTATGGGTTCAAATTCTATTTCAT
GTAGTGTCGGTAGTGGTAGTTGTGGTAGTGGTAGTGGAGGTTGTGGTGATTTAACTGGTG
GAGCTAAATCAAGTGGTGGTAGTTGTGGAGGAAAAGGTGGATCACACAATCATGGCCATG
GTCATGGACCACATGGTCAAGGTGGTAAAGGTTCAGGAGGTTCATGTAGTTGTTAATATT
TACACATATATATATTTTAAATATTACTTCAATTGTAATAATAAATTATTTAAAATAAAA
ATCGCACCTATTTTAATTTTATTTAAAAATAATTTATTTTTATTTTTATAGTAAATTTAA
AAAAAGGACTATTTCGCACCATTAAAAAAAAAAXXXXXXXXXXATTATACCAATTATTTA
TAATACAAAATACAAAATAAATCAAATCAAATCAAATCAAAATAAAATAAAAAAATGACA
CTCTTTTCATCGATCTCATCATTGTCAAGTTCAATGACAAGTTCAAGATCTATTTTCGCT
TCATTTGGTAGTGGAACAATTATGGGTTCAAATTCTATTTCATGTAGTGTCGGTAGTGGT
AGTTGTGGTAGTGGTAGTGGAGGTTGTGGTGATTTAACTGGTGGAGCTAAATCAAGTGGT
GGTAGTTGTGGAGGAAAAGGTGGATCACACAATCATGGCCATGGTCATGGACCACATGGT
CAAGGTGGTAAAGGTTCAGGAGGTTCATGTAGTTGTTAATATTTACACATATATATATTT
TAAATATTACTTCAATTGTAATAATAAATTATTTAAAATAAAAATCGCACCTATTTTAAT
TTTATTTAAAAATAATTTATTTTTATTTTTATAGTAAATTTAAAAAAAGGACTATTTCGC
ACCA
sequence update 2002.10.25
Translated Amino Acid sequence 
ytnyl*ykiqnksnqiksk*nkkmtlfssisslsssmtssrsifasfgsgtimgsnsisc
svgsgscgsgsggcgdltggakssggscggkggshnhghghgphgqggkgsggscsc*yl
hiyif*illql***ii*nknrtyfnfi*k*FIFIFIVNLKKGLFRTIKKK---

---IIPIIYNTKYKINQIKSNQNKIKK*hsfhrshhcqvq*qvqdlfslhlvveqlwvqi
lfhvvsvvvvvvvvvevvvi*lvelnqvvvvveekvdhtimamvmdhmvkvvkvqevhvv
vniytyiyfkyyfncnnklfkikiapililfknnlflfl**i*kkdyfap
Translated Amino Acid sequence (All Frames) 
Frame A:
iipiiyntkykinqiksnqnkikk*hsfhrshhcqvq*qvqdlfslhlvveqlwvqilfh
vvsvvvvvvvvvevvvi*lvelnqvvvvveekvdhtimamvmdhmvkvvkvqevhvvvni
ytyiyfkyyfncnnklfkikiapililfknnlflfl**i*kkdyfaplkkk---

---IIPIIYNTKYKINQIKSNQNKIKK*hsfhrshhcqvq*qvqdlfslhlvveqlwvqi
lfhvvsvvvvvvvvvevvvi*lvelnqvvvvveekvdhtimamvmdhmvkvvkvqevhvv
vniytyiyfkyyfncnnklfkikiapililfknnlflfl**i*kkdyfap

Frame B:
lyqlfiiqntk*iksnqikik*kndtlfidliivkfndkfkiyfrfiw*wnnygfkfyfm
*cr*w*lw*w*wrlw*fnwws*ikww*lwrkrwitqswpwswttwsrw*rfrrfm*llif
thiyilnitsiviinylk*kshlf*fylkiiyfyfyskfkkrtishh*kk---

---lyqlfiiqntk*iksnqikik*kndtlfidliivkfndkfkiyfrfiw*wnnygfkf
yfm*cr*w*lw*w*wrlw*fnwws*ikww*lwrkrwitqswpwswttwsrw*rfrrfm*l
lifthiyilnitsiviinylk*kshlf*fylkiiyfyfyskfkkrtish

Frame C:
ytnyl*ykiqnksnqiksk*nkkmtlfssisslsssmtssrsifasfgsgtimgsnsisc
svgsgscgsgsggcgdltggakssggscggkggshnhghghgphgqggkgsggscsc*yl
hiyif*illql***ii*nknrtyfnfi*k*FIFIFIVNLKKGLFRTIKKK---

---ytnyl*ykiqnksnqiksk*nkkmtlfssisslsssmtssrsifasfgsgtimgsns
iscsvgsgscgsgsggcgdltggakssggscggkggshnhghghgphgqggkgsggscsc
*ylhiyif*illql***ii*nknrtyfnfi*k*fififivnlkkglfrt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI219 (SSI219Q) /CSM/SS/SSI2-A/SSI219Q.Seq.d/                        581   e-165
SSA136 (SSA136Q) /CSM/SS/SSA1-B/SSA136Q.Seq.d/                        581   e-165
CHF225 (CHF225Q) /CSM/CH/CHF2-B/CHF225Q.Seq.d/                        581   e-165
CHE539 (CHE539Q) /CSM/CH/CHE5-B/CHE539Q.Seq.d/                        581   e-165
SLA448 (SLA448Q) /CSM/SL/SLA4-B/SLA448Q.Seq.d/                        575   e-163
SSA560 (SSA560Q) /CSM/SS/SSA5-C/SSA560Q.Seq.d/                        442   e-123
SLB664 (SLB664Q) /CSM/SL/SLB6-C/SLB664Q.Seq.d/                        375   e-103
SHL790 (SHL790Q) /CSM/SH/SHL7-D/SHL790Q.Seq.d/                        375   e-103
CHR471 (CHR471Q) /CSM/CH/CHR4-C/CHR471Q.Seq.d/                        375   e-103
CHR272 (CHR272Q) /CSM/CH/CHR2-C/CHR272Q.Seq.d/                        375   e-103
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16827|X16827.1 Dictyostelium discoideum 2C mRNA.                 192   2e-74  3
AF217030|AF217030.1 Plasmodium falciparum isolate 71-30A merozoite surface protein 2 (MSP2) gene, partial cds.    34   1e-07  4
AF217017|AF217017.1 Plasmodium falciparum isolate 15-50A1 merozoite surface protein 2 (MSP2) gene, partial cds.    34   2e-07  4
BI783235|BI783235.1 kh48g09.y1 Ascaris suum male gut pAMP1 v2 Chiapelli McCarter Ascaris suum cDNA 5' similar to contains element MSR1 repetitive element ;, mRNA sequence.    44   4e-07  4
AF329561|AF329561.1 Plasmodium falciparum genotype 1 from Indonesia merozoite surface protein 2 gene, partial cds.    34   5e-07  5
AY587894|AY587894.1 Plasmodium falciparum merozoite surface protein 2 (MSP2) gene, MSP2-33 allele, partial cds.    34   6e-07  4
U72953|U72953.1 Plasmodium falciparum merozoite surface protein 2 (MSP-2) gene, partial cds.    34   1e-06  5
AF329558|AF329558.1 Plasmodium falciparum genotype 1 from Solomon Islands merozoite surface protein 2 gene, partial cds.    34   2e-06  5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48   2e-06  11
BQ973200|BQ973200.1 QHI12C24.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHI12C24, mRNA sequence.    44   2e-06  2
dna update 2004. 9.25
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 642,203,753
protein update 2009. 3.30
PSORT 

 psg: 0.57  gvh: 0.22  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHE539 is nuc
5' end seq. ID CHE539F
5' end seq. 
>CHE539F.Seq
ATTATACCAATTATTTATAATACAAAATACAAAATAAATCAAATCAAATCAAATCAAAAT
AAAATAAAAAAATGACACTCTTTTCATCGATCTCATCATTGTCAAGTTCAATGACAAGTT
CAAGATCTATTTTCGCTTCATTTGGTAGTGGAACAATTATGGGTTCAAATTCTATTTCAT
GTAGTGTCGGTAGTGGTAGTTGTGGTAGTGGTAGTGGAGGTTGTGGTGATTTAACTGGTG
GAGCTAAATCAAGTGGTGGTAGTTGTGGAGGAAAAGGTGGATCACACAATCATGGCCATG
GTCATGGACCACATGGTCAAGGTGGTAAAGGTTCAGGAGGTTCATGTAGTTGTTAATATT
TACACATATATATATTTTAAATATTACTTCAATTGTAATAATAAATTATTTAAAATAAAA
ATCGCACCTATTTTAATTTTATTTAAAAATAATTTATTTTTATTTTTATAGTAAATTTAA
AAAAAGGACTATTTCGCACCATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 523
3' end seq. ID CHE539Z
3' end seq. 
>CHE539Z.Seq
NNNNNNNNNNATTATACCAATTATTTATAATACAAAATACAAAATAAATCAAATCAAATC
AAATCAAAATAAAATAAAAAAATGACACTCTTTTCATCGATCTCATCATTGTCAAGTTCA
ATGACAAGTTCAAGATCTATTTTCGCTTCATTTGGTAGTGGAACAATTATGGGTTCAAAT
TCTATTTCATGTAGTGTCGGTAGTGGTAGTTGTGGTAGTGGTAGTGGAGGTTGTGGTGAT
TTAACTGGTGGAGCTAAATCAAGTGGTGGTAGTTGTGGAGGAAAAGGTGGATCACACAAT
CATGGCCATGGTCATGGACCACATGGTCAAGGTGGTAAAGGTTCAGGAGGTTCATGTAGT
TGTTAATATTTACACATATATATATTTTAAATATTACTTCAATTGTAATAATAAATTATT
TAAAATAAAAATCGCACCTATTTTAATTTTATTTAAAAATAATTTATTTTTATTTTTATA
GTAAATTTAAAAAAAGGACTATTTCGCACCA
Length of 3' end seq. 511
Connected seq. ID CHE539P
Connected seq. 
>CHE539P.Seq
ATTATACCAATTATTTATAATACAAAATACAAAATAAATCAAATCAAATCAAATCAAAAT
AAAATAAAAAAATGACACTCTTTTCATCGATCTCATCATTGTCAAGTTCAATGACAAGTT
CAAGATCTATTTTCGCTTCATTTGGTAGTGGAACAATTATGGGTTCAAATTCTATTTCAT
GTAGTGTCGGTAGTGGTAGTTGTGGTAGTGGTAGTGGAGGTTGTGGTGATTTAACTGGTG
GAGCTAAATCAAGTGGTGGTAGTTGTGGAGGAAAAGGTGGATCACACAATCATGGCCATG
GTCATGGACCACATGGTCAAGGTGGTAAAGGTTCAGGAGGTTCATGTAGTTGTTAATATT
TACACATATATATATTTTAAATATTACTTCAATTGTAATAATAAATTATTTAAAATAAAA
ATCGCACCTATTTTAATTTTATTTAAAAATAATTTATTTTTATTTTTATAGTAAATTTAA
AAAAAGGACTATTTCGCACCATTAAAAAAAAAA----------ATTATACCAATTATTTA
TAATACAAAATACAAAATAAATCAAATCAAATCAAATCAAAATAAAATAAAAAAATGACA
CTCTTTTCATCGATCTCATCATTGTCAAGTTCAATGACAAGTTCAAGATCTATTTTCGCT
TCATTTGGTAGTGGAACAATTATGGGTTCAAATTCTATTTCATGTAGTGTCGGTAGTGGT
AGTTGTGGTAGTGGTAGTGGAGGTTGTGGTGATTTAACTGGTGGAGCTAAATCAAGTGGT
GGTAGTTGTGGAGGAAAAGGTGGATCACACAATCATGGCCATGGTCATGGACCACATGGT
CAAGGTGGTAAAGGTTCAGGAGGTTCATGTAGTTGTTAATATTTACACATATATATATTT
TAAATATTACTTCAATTGTAATAATAAATTATTTAAAATAAAAATCGCACCTATTTTAAT
TTTATTTAAAAATAATTTATTTTTATTTTTATAGTAAATTTAAAAAAAGGACTATTTCGC
ACCA
Length of connected seq. 1014
Full length Seq ID -
Full length Seq. -
Length of full length seq. -