CHE515
Library CH
(Link to library)
Clone ID CHE515
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID CHE515P
(Link to Original site)
Representative DNA sequence
>CHE515 (CHE515Q) /CSM/CH/CHE5-A/CHE515Q.Seq.d/
ATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTA
ACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCAATAATTCAACTGGTTGTGTAA
ACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATGCCTGTACCAAATCAA
CAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATGTACAATTGATGCAT
GTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGATAACAATGCCTGTA
CAATTGATGCATGTACAAAAGAANGTGGTGTAACTCATACTCCANTCAATACTGATGATA
ACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTCCCACACCCCAATTA
ACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTCAACCGGTTGTTGCA
ACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTCATGTACCAAACCAA
CAGGTGTCACTCATACCCCAGTCAATGNNGATGATAACAACAAATGTACAATTGATGCAT
GTACCAAAGAAGGNGGTGTAACTCATACTCCAGTCAATACTGATGATAACAATGCATGTA
CCCTTGATTCCTGTTCACCATCAACTGGTATTTCCCACGCTCCAATTAACTGTGATGATA
GTAAATCCATGTACCATAGATTCATGCAATAATTCAACTGGGTTGNTGCNACACTCCAAT
CAATGGTGATGATAATAATCCCTGGTACCGTAAATTCATGXXXXXXXXXXCGATTCCNAN
ACTGGTNAATGTATTNACNAACCNTATAATGTTATCCCNAGTGGNTTTAANTTAATNTTT
GGNTTAANTGGNGGTTTCNNTGGTGGTGGNACANGAGGTAAANGTGATTGCNAAACTTGT
AAAAATTAAANAACTCNTTTTATTTAATTANATTTTAAAAAAATTCNAAAAAAATTCNAA
AAAAAATTCNAGAAAAAAAAAAAACTATTTGTTTTCTTATCTAATATTTATAATTTTTAA
AAATAAAAATTC
sequence update 2002.10.25
Translated Amino Acid sequence
**mycrfmfklnwlckysn*l*r**smyrrlmq*fnwlckhssqc****smyrrclyqin
rcysypsqcr**qqmyn*cmyqrrwcnsypsqy***qclyn*cmykrxwcnsysxqy***
qclyp*llftinwrfphpn*l****smyrrlmfkfnrllqhsnqc****smycrfmyqtn
rchsypsqxx**qqmyn*cmyqrrxcnsyssqy***qcmyp*flftinwyfprsn*l***
*ihvp*IHAIIQLGXCXTPINGDDNNPWYRKFM---

---DSXTGXCIXXPYNVIPSGFXLXFGLXGGFXGGGTXGKXDCXTCKN*xtxfi*lxfkk
ixkkfxkkfxkkkklfvflsniynf*k*kf


Translated Amino Acid sequence (All Frames)
Frame A:
iinvl*ihvqtqlvv*ilqltvtivihvp*thaiiqlvv*tlqsmlmiiihvpsmpvpnq
qvllipqsm*mittnvqlmhvpkkvv*lipqsilmitmpvqlmhvqkxvv*lilxsilmi
tmlvpltpvhhqlafptpqltvmivihvp*thvqiqpvvatlqsmlmiiihvl*ihvpnq
qvslipqsmxmittnvqlmhvpkkxv*lilqsilmitmhvplipvhhqlvfptlqltvmi
vnpctidscnnstglxxhsnqw****slvp*ih---

---rfxxwxmyxxtx*cypxwx*xnxwxxwxfxwwwxxr*x*lxnl*klxnsfylixf*k
nskkixkkixekkkticfli*yl*flkiki

Frame B:
**mycrfmfklnwlckysn*l*r**smyrrlmq*fnwlckhssqc****smyrrclyqin
rcysypsqcr**qqmyn*cmyqrrwcnsypsqy***qclyn*cmykrxwcnsysxqy***
qclyp*llftinwrfphpn*l****smyrrlmfkfnrllqhsnqc****smycrfmyqtn
rchsypsqxx**qqmyn*cmyqrrxcnsyssqy***qcmyp*flftinwyfprsn*l***
*ihvp*IHAIIQLGXCXTPINGDDNNPWYRKFM---

---DSXTGXCIXXPYNVIPSGFXLXFGLXGGFXGGGTXGKXDCXTCKN*xtxfi*lxfkk
ixkkfxkkfxkkkklfvflsniynf*k*kf

Frame C:
nkctvdscsnstgcvntpincddsnpctvdscnnstgcvntpvnvddnnpctvdactkst
gvthtpvnvddnnkctidactkeggvthtpvntddnnactidactkexgvthtpxntddn
nactldscspstgvshtpincddsnpctvdscsnstgccntpinvddnnpctvdsctkpt
gvthtpvnxddnnkctidactkeggvthtpvntddnnactldscspstgishapincdds
ksmyhrfmq*fnwvxatlqsmvmiiipgtvns---

---ipxlvnvxtnximlsxvxlx*xlx*xxvsxvvxxevxviaklvkikxlxlfnxilkk
fxknskknsrkkknylfsylifiifknkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHE515 (CHE515Q) /CSM/CH/CHE5-A/CHE515Q.Seq.d/ 1689 0.0
SHF211 (SHF211Q) /CSM/SH/SHF2-A/SHF211Q.Seq.d/ 1493 0.0
CHI784 (CHI784Q) /CSM/CH/CHI7-D/CHI784Q.Seq.d/ 1465 0.0
SHG420 (SHG420Q) /CSM/SH/SHG4-A/SHG420Q.Seq.d/ 1459 0.0
CHF469 (CHF469Q) /CSM/CH/CHF4-C/CHF469Q.Seq.d/ 1294 0.0
CHQ421 (CHQ421Q) /CSM/CH/CHQ4-A/CHQ421Q.Seq.d/ 1291 0.0
SHG235 (SHG235Q) /CSM/SH/SHG2-B/SHG235Q.Seq.d/ 1221 0.0
CHR337 (CHR337Q) /CSM/CH/CHR3-B/CHR337Q.Seq.d/ 1219 0.0
SHF749 (SHF749Q) /CSM/SH/SHF7-C/SHF749Q.Seq.d/ 1199 0.0
CHQ176 (CHQ176Q) /CSM/CH/CHQ1-D/CHQ176Q.Seq.d/ 1176 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 50 4e-19 6
AC100096|AC100096.1 Mus musculus clone RP23-38A11, LOW-PASS SEQUENCE SAMPLING. 48 8e-06 3
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 36 5e-05 17
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence. 34 2e-04 15
AJ323759|AJ323759.1 Homo sapiens genomic sequence surrounding NotI site, clone HSJ41-849S. 44 0.001 2
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 32 0.002 12
AC107998|AC107998.1 Homo sapiens chromosome 18 clone RP11-1122B5 map 18, LOW-PASS SEQUENCE SAMPLING. 42 0.004 2
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 36 0.004 12
BQ739629|BQ739629.1 PfESToab48c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9U0J6 Q9U0J6 HYPOTHETICAL 312.5 KD PROTEIN. ;, mRNA sequence. 30 0.009 4
CR720199|CR720199.1 Tetraodon nigroviridis full-length cDNA. 46 0.012 2
dna update 2004. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 384 e-109
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 365 e-104
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 366 e-104
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 303 9e-83
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 280 5e-74
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 264 3e-69
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 125 2e-27
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 122 2e-26
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 119 3e-26
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 103 1e-20
protein update 2009. 3.30
PSORT

psg: 0.86 gvh: 0.57 alm: 0.43 top: 0.37 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
20.0 %: extracellular, including cell wall
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHE515 is cyt

5' end seq. ID CHE515F
5' end seq.
>CHE515F.Seq
ATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTA
ACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCAATAATTCAACTGGTTGTGTAA
ACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATGCCTGTACCAAATCAA
CAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATGTACAATTGATGCAT
GTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGATAACAATGCCTGTA
CAATTGATGCATGTACAAAAGAANGTGGTGTAACTCATACTCCANTCAATACTGATGATA
ACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTCCCACACCCCAATTA
ACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTCAACCGGTTGTTGCA
ACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTCATGTACCAAACCAA
CAGGTGTCACTCATACCCCAGTCAATGNNGATGATAACAACAAATGTACAATTGATGCAT
GTACCAAAGAAGGNGGTGTAACTCATACTCCAGTCAATACTGATGATAACAATGCATGTA
CCCTTGATTCCTGTTCACCATCAACTGGTATTTCCCACGCTCCAATTAACTGTGATGATA
GTAAATCCATGTACCATAGATTCATGCAATAATTCAACTGGGTTGNTGCNACACTCCAAT
CAATGGTGATGATAATAATCCCTGGTACCGTAAATTCATGNNNNNNNNNN
Length of 5' end seq. 830
3' end seq. ID CHE515Z
3' end seq.
>CHE515Z.Seq
NNNNNNNNNNCGATTCCNANACTGGTNAATGTATTNACNAACCNTATAATGTTATCCCNA
GTGGNTTTAANTTAATNTTTGGNTTAANTGGNGGTTTCNNTGGTGGTGGNACANGAGGTA
AANGTGATTGCNAAACTTGTAAAAATTAAANAACTCNTTTTATTTAATTANATTTTAAAA
AAATTCNAAAAAAATTCNAAAAAAAATTCNAGAAAAAAAAAAAACTATTTGTTTTCTTAT
CTAATATTTATAATTTTTAAAAATAAAAATTC
Length of 3' end seq. 272
Connected seq. ID CHE515P
Connected seq.
>CHE515P.Seq
ATAATAAATGTACTGTAGATTCATGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTA
ACTGTGACGATAGTAATCCATGTACCGTAGACTCATGCAATAATTCAACTGGTTGTGTAA
ACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATGCCTGTACCAAATCAA
CAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATGTACAATTGATGCAT
GTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGATAACAATGCCTGTA
CAATTGATGCATGTACAAAAGAANGTGGTGTAACTCATACTCCANTCAATACTGATGATA
ACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTCCCACACCCCAATTA
ACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTCAACCGGTTGTTGCA
ACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTCATGTACCAAACCAA
CAGGTGTCACTCATACCCCAGTCAATGNNGATGATAACAACAAATGTACAATTGATGCAT
GTACCAAAGAAGGNGGTGTAACTCATACTCCAGTCAATACTGATGATAACAATGCATGTA
CCCTTGATTCCTGTTCACCATCAACTGGTATTTCCCACGCTCCAATTAACTGTGATGATA
GTAAATCCATGTACCATAGATTCATGCAATAATTCAACTGGGTTGNTGCNACACTCCAAT
CAATGGTGATGATAATAATCCCTGGTACCGTAAATTCATG----------CGATTCCNAN
ACTGGTNAATGTATTNACNAACCNTATAATGTTATCCCNAGTGGNTTTAANTTAATNTTT
GGNTTAANTGGNGGTTTCNNTGGTGGTGGNACANGAGGTAAANGTGATTGCNAAACTTGT
AAAAATTAAANAACTCNTTTTATTTAATTANATTTTAAAAAAATTCNAAAAAAATTCNAA
AAAAAATTCNAGAAAAAAAAAAAACTATTTGTTTTCTTATCTAATATTTATAATTTTTAA
AAATAAAAATTC
Length of connected seq. 1082
Full length Seq ID -
Full length Seq. -
Length of full length seq. -