>CHE473 (CHE473Q) /CSM/CH/CHE4-D/CHE473Q.Seq.d/
XXXXXXXXXXTGATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTC
ATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAAT
CAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAAC
AACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATT
TAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATC
ATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTG
AACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTG
GTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATA
CAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAAT
GTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATG
CAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTA
TACCAACTTCAACAATTTTAACTGGNATTAGNCAAGTTTCAAAAAA

---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ
HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE
PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC
NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTGIXQVSK

Frame A:
---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ
HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE
PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC
NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTGIXQVSK


Frame B:
---ikli*ly*kllimiqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnn
mmkkimkqvvvvtimmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfviln
qlnslakmkdywvkilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nv
tlyqnqvtlnph*sfqslmqnllvw*shni*liqiniivyqlqqf*lxlxkfqk


Frame C:
---sn*fsfirny*l*fnssfkf****y***w*y***rinkk*www**i**qi*kskttt
**kr**skw***q****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*t
n*ihwpk*riig*ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm*
lctrtrll*ilinlfkv*ckiywfgkvtiyd*sk*illytnfnnfnwx*xsfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE473 (CHE473Q) /CSM/CH/CHE4-D/CHE473Q.Seq.d/                       1368   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1360   0.0
CFI603 (CFI603Q) /CSM/CF/CFI6-A/CFI603Q.Seq.d/                       1360   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1360   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1360   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1360   0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/                       1352   0.0
CFF509 (CFF509Q) /CSM/CF/CFF5-A/CFF509Q.Seq.d/                       1346   0.0
AFI195 (AFI195Q) /CSM/AF/AFI1-D/AFI195Q.Seq.d/                       1344   0.0
AFK472 (AFK472Q) /CSM/AF/AFK4-C/AFK472Q.Seq.d/                       1338   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   2e-19  24
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   1e-17  21
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   2e-13  22
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    58   2e-13  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   4e-13  22
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42   6e-13  15
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    42   2e-12  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   2e-12  19
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    52   4e-12  13
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    40   6e-12  16

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    39   0.11
(P95994) RecName: Full=UPF0103 protein SSO0066;  &AE006641_61(AE...    34   4.8

 psg: 0.75  gvh: 0.31  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHE473 is nuc

>CHE473Z.Seq
NNNNNNNNNNTGATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTC
ATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAAT
CAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAAC
AACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATT
TAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATC
ATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTG
AACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTG
GTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATA
CAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAAT
GTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATG
CAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTA
TACCAACTTCAACAATTTTAACTGGNATTAGNCAAGTTTCAAAAAA