>CHE465 (CHE465Q) /CSM/CH/CHE4-C/CHE465Q.Seq.d/
XXXXXXXXXXTCAAGGANGGTCTNNNTGATATTGCCAGCTNGNTATCCAGGTTTAATTCA
AAATATTAGAGGTGAAGGTACTTTCTGNGGCTATTGATTTCCCAACNCCAGCTGAACGTG
ATCGTGTCATCTCTCACATTCGTTTATTAGGTGTTGAAATGGGTGGTTGTGGTGAAAGAT
CAATTCGTTTCCGTCCAATGTTAGTTTGTCAACCATCTCACATTAATCAATTCCTTAATC
GNTTCGATCAAACAATGAAAGAATTATAGAAAAATTAAAAAAAAACAACCATGTTTGATG
AAATAATACAATATTATTTTTCTTTTTCAATTATTNTCATCA

---qgxsx*ycqlxiqv*FKILEVKVLSXAIDFPTPAERDRVISHIRLLGVEMGGCGERS
IRFRPMLVCQPSHINQFLNRFDQTMKEL*kn*kkttmfdeiiqyyfsfsiixi

Frame A:
---qgxsx*ycqlxiqv*FKILEVKVLSXAIDFPTPAERDRVISHIRLLGVEMGGCGERS
IRFRPMLVCQPSHINQFLNRFDQTMKEL*kn*kkttmfdeiiqyyfsfsiixi


Frame B:
---kxglxdiasxxsrfnsky*r*ryflxllisqxqlnvivssltfvy*vlkwvvvvkdq
fvsvqc*fvnhltlinslixsikq*knyrkikkkqpclmk*yniiflfqlxss


Frame C:
---rxvxxilpaxypgliqnirgegtfxgy*fpnxs*t*schlshsfirc*ngwlw*kin
sfpsnvslstish*sip*sxrsnneriieklkknnhv**nntilffffnyxh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE465 (CHE465Q) /CSM/CH/CHE4-C/CHE465Q.Seq.d/                        545   e-154
VSF140 (VSF140Q) /CSM/VS/VSF1-B/VSF140Q.Seq.d/                        490   e-138
VFL847 (VFL847Q) /CSM/VF/VFL8-B/VFL847Q.Seq.d/                        490   e-138
SLH684 (SLH684Q) /CSM/SL/SLH6-D/SLH684Q.Seq.d/                        490   e-138
SFK578 (SFK578Q) /CSM/SF/SFK5-D/SFK578Q.Seq.d/                        490   e-138
AFN804 (AFN804Q) /CSM/AF/AFN8-A/AFN804Q.Seq.d/                        490   e-138
VSH426 (VSH426Q) /CSM/VS/VSH4-B/VSH426Q.Seq.d/                        484   e-136
AFI430 (AFI430Q) /CSM/AF/AFI4-B/AFI430Q.Seq.d/                        482   e-135
VSC446 (VSC446Q) /CSM/VS/VSC4-B/VSC446Q.Seq.d/                        474   e-133
SLA648 (SLA648Q) /CSM/SL/SLA6-B/SLA648Q.Seq.d/                        430   e-120

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL589791|AL589791.4 Human DNA sequence from clone RP11-505P2 on chromosome 13.    44   0.007  4
AC101220|AC101220.1 Mus musculus clone RP23-96B1, LOW-PASS SEQUENCE SAMPLING.    40   0.008  2
AI286019|AI286019.1 qh98e08.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1855046 3' similar to SW:GABT_HUMAN P80404 4-AMINOBUTYRATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    50   0.020  1
AL139185|AL139185.9 Human DNA sequence from clone RP11-75E6 on chromosome 13q31.1-31.3.    44   0.050  2
AL807234|AL807234.6 Mouse DNA sequence from clone RP23-293E12 on chromosome 4.    36   0.10   7
AC016674|AC016674.9 Homo sapiens BAC clone RP11-36C8 from 2, complete sequence.    42   0.11   2
AC144994|AC144994.2 Danio rerio clone CH211-41L14 strain Tue, WORKING DRAFT SEQUENCE, 10 ordered pieces.    38   0.13   3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   0.14   9
AC123903|AC123903.2 Homo sapiens chromosome 3 clone RP11-182A24, complete sequence.    42   0.24   2
CA854657|CA854657.1 PfESToac34f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    42   0.28   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_9211(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    57   6e-09
BT044845_1(BT044845|pid:none) Salmo salar clone ssal-rgf-505-165...    56   2e-08
BT045250_1(BT045250|pid:none) Salmo salar clone ssal-rgf-516-187...    56   2e-08
(P80147) RecName: Full=4-aminobutyrate aminotransferase, mitocho...    52   2e-08
BC061933_1(BC061933|pid:none) Xenopus laevis hypothetical protei...    54   5e-08
CP001328_286(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    53   5e-08
BC074179_1(BC074179|pid:none) Xenopus laevis hypothetical protei...    54   6e-08
AK293983_1(AK293983|pid:none) Homo sapiens cDNA FLJ56034 complet...    50   1e-07
BC060364_1(BC060364|pid:none) Xenopus laevis hypothetical protei...    52   1e-07
U80226_1(U80226|pid:none) Human gamma-aminobutyric acid transami...    50   1e-07

 psg: 0.81  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHE465 is cyt

>CHE465Z.Seq
NNNNNNNNNNTCAAGGANGGTCTNNNTGATATTGCCAGCTNGNTATCCAGGTTTAATTCA
AAATATTAGAGGTGAAGGTACTTTCTGNGGCTATTGATTTCCCAACNCCAGCTGAACGTG
ATCGTGTCATCTCTCACATTCGTTTATTAGGTGTTGAAATGGGTGGTTGTGGTGAAAGAT
CAATTCGTTTCCGTCCAATGTTAGTTTGTCAACCATCTCACATTAATCAATTCCTTAATC
GNTTCGATCAAACAATGAAAGAATTATAGAAAAATTAAAAAAAAACAACCATGTTTGATG
AAATAATACAATATTATTTTTCTTTTTCAATTATTNTCATCA