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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE460
Library CH
(Link to library)
Clone ID CHE460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CHE460P
(Link to Original site)
Representative DNA sequence 
>CHE460 (CHE460Q) /CSM/CH/CHE4-C/CHE460Q.Seq.d/
TGTTGGCCTACTGGACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTAC
CTTTAACGAATACCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGT
CTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAA
TAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGC
AATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGT
TAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATT
AGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATG
CGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCC
AAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTT
CAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGT
CCAATTATGGAAAGGTXXXXXXXXXXACGAATCATTGTATGACACCATTTTGGAACGTTT
AACCAAAGCCACAAAACCATTANAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGT
CCACTCCACACCCAAAGCGNTGTTAAAGAATTCANTGAAGGTCTTGAAGAAATAAAAAAG
CAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGNAACTTTGTT
GAACCNACCGTNGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTT
CCAATTCTGTACATAATGAAATTCAAANATCTTCACGATGCTTTTGCCTGGAATAATGAA
GTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGG
CTTGGACCCACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAG
sequence update 2002.10.25
Translated Amino Acid sequence 
vglldkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNN
KVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISL
EMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAF
NFPCAVLGWNAAISMICGNVQLWKG---

---ESLYDTILERLTKATKPLXSVIHLKKVF**vhstpkaxlknsxkvlkk*kskvvrss
lvvinsisvvxtllnxpxlplnmmlqs*rlnslfqfct**nsxiftmllpgimkshkvsh
lpssqtikrissngldppdltvv*lt*m*
Translated Amino Acid sequence (All Frames) 
Frame A:
cwptgqktfsnktdklkndyl*ripilg*irh*s*k**wslqwkmgrcw*nhqmfksnk*
*sycnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfi
rng*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycf
qfpmcrtwleccnlndlr*rpimer---

---tnhcmtpfwnv*pkpqnhxnr*st*rrcfsrstphpkrc*rix*rs*rnkkarw*gr
hww**tryqwwxlc*txrxch*t*csnrkd*tlcsnsvhneiqxssrcfcle**sptrsl
ifplhkqskeylqmawthri*lwys*rkc

Frame B:
vglldkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNN
KVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISL
EMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAF
NFPCAVLGWNAAISMICGNVQLWKG---

---riiv*hhfgtfnqshktixignpleegvlvgplhtqsxvkefxegleeikkqggkvv
iggnkldisggnfveptvvaiehdapivktelfvpilyimkfkxlhdafawnnevpqgls
sslftnnqknifkwlgptgsdcgivnvnv

Frame C:
laywtknif**nr*ikk*lpltnthswln*alklkimmessmengevlvkssnv*iqqii
kllqllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*
kwvkftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvsllls
ishvpylvgmlqsq*favtsnygk---

---ESLYDTILERLTKATKPLXSVIHLKKVF**vhstpkaxlknsxkvlkk*kskvvrss
lvvinsisvvxtllnxpxlplnmmlqs*rlnslfqfct**nsxiftmllpgimkshkvsh
lpssqtikrissngldppdltvv*lt*m*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE460 (CHE460Q) /CSM/CH/CHE4-C/CHE460Q.Seq.d/                       2012   0.0
CFC708 (CFC708Q) /CSM/CF/CFC7-A/CFC708Q.Seq.d/                       1213   0.0
CHE175 (CHE175Q) /CSM/CH/CHE1-D/CHE175Q.Seq.d/                       1205   0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/                       1185   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1185   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1185   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1185   0.0
SFH477 (SFH477Q) /CSM/SF/SFH4-D/SFH477Q.Seq.d/                       1185   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1185   0.0
SFF292 (SFF292Q) /CSM/SF/SFF2-D/SFF292Q.Seq.d/                       1185   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   815   0.0    7
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   8e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  2
CV150833|CV150833.1 Mdst6010o01.y1 Mdst Malus x domestica cDNA clone Mdst6010o01 5' similar to TR:Q9ZPB7 Q9ZPB7 PROTEIN ABUNDANTLY EXPRESSED DURING APPLE FRUIT DEVELOPMENT. ;, mRNA sequence.    72   2e-08  1
CV149734|CV149734.1 Mdst6007g23.y1 Mdst Malus x domestica cDNA clone Mdst6007g23 5' similar to TR:Q9ZPB7 Q9ZPB7 PROTEIN ABUNDANTLY EXPRESSED DURING APPLE FRUIT DEVELOPMENT. ;, mRNA sequence.    72   2e-08  1
CN883223|CN883223.1 010813AASB004877HT (AASB) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASB004877, mRNA sequence.    72   2e-08  1
CN875989|CN875989.1 020813AARA008546HT (AARA) Royal Gala partially senescing leaf Malus x domestica cDNA clone AARA008546, mRNA sequence.    72   2e-08  1
CN903667|CN903667.1 021018ABCA005552HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus x domestica cDNA clone ABCA005552, mRNA sequence.    72   2e-08  1
CN902319|CN902319.1 021014ABCA004075HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus x domestica cDNA clone ABCA004075, mRNA sequence.    64   5e-06  1
CN895049|CN895049.1 010626AAYA004321HT (AAYA) Royal Gala 126 DAFB fruit cortex Malus x domestica cDNA clone AAYA004321, mRNA sequence.    64   5e-06  1
dna update 2004. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   387   e-106
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   242   2e-62
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   238   2e-61
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   238   3e-61
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   232   1e-59
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   232   2e-59
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   230   5e-59
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   230   5e-59
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   229   2e-58
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   228   2e-58
protein update 2009. 3.30
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.57  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHE460 is cyt
5' end seq. ID CHE460F
5' end seq. 
>CHE460F.Seq
TGTTGGCCTACTGGACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTAC
CTTTAACGAATACCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGT
CTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAA
TAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGC
AATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGT
TAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATT
AGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATG
CGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCC
AAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTT
CAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGT
CCAATTATGGAAAGGTNNNNNNNNNN
Length of 5' end seq. 626
3' end seq. ID CHE460Z
3' end seq. 
>CHE460Z.Seq
NNNNNNNNNNACGAATCATTGTATGACACCATTTTGGAACGTTTAACCAAAGCCACAAAA
CCATTANAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACACCCAAA
GCGNTGTTAAAGAATTCANTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAAGGTCG
TCATTGGTGGTAATAAACTCGATATCAGTGGTGGNAACTTTGTTGAACCNACCGTNGTTG
CCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTGTACATAA
TGAAATTCAAANATCTTCACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGGTCTCT
CATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCCACCGGAT
CTGACTGTGGTATAGTTAACGTAAATGTAG
Length of 3' end seq. 450
Connected seq. ID CHE460P
Connected seq. 
>CHE460P.Seq
TGTTGGCCTACTGGACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTAC
CTTTAACGAATACCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGT
CTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAA
TAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGC
AATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGT
TAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATT
AGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATG
CGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCC
AAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTT
CAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGT
CCAATTATGGAAAGGT----------ACGAATCATTGTATGACACCATTTTGGAACGTTT
AACCAAAGCCACAAAACCATTANAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGT
CCACTCCACACCCAAAGCGNTGTTAAAGAATTCANTGAAGGTCTTGAAGAAATAAAAAAG
CAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGNAACTTTGTT
GAACCNACCGTNGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTT
CCAATTCTGTACATAATGAAATTCAAANATCTTCACGATGCTTTTGCCTGGAATAATGAA
GTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGG
CTTGGACCCACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAG
Length of connected seq. 1056
Full length Seq ID -
Full length Seq. -
Length of full length seq. -