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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHE433
Library CH
(Link to library)
Clone ID CHE433
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14976-1
Original site URL
Representative seq. ID CHE433P
(Link to Original site)
Representative DNA sequence 
>CHE433 (CHE433Q) /CSM/CH/CHE4-B/CHE433Q.Seq.d/
AATTTTTTTTCTTTATTGTTATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATT
CTTTCAAAGGTATTAGTGGCAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTA
GTTCAAGAATATAAAGATTATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTT
GAACAACCAACAGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAA
GTACAACAATACACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGAT
AAAGGTGATTATAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAA
TATCCACCATTTGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAA
GAAGCTGGTGATTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGAT
AATCCAGATAAAGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGA
TTATTGGAAGCTGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGA
XXXXXXXXXXAACTGTTTCAAGTGGTGNGGNAACATTTAGATCCAAAATATTCAGTTTCN
ATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGANCATTATGAAGACTATTATTCA
TTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAATAAAGAG
AATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGTTCCACA
GAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTTGCAACC
AAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTTCAATCA
ATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTAGTTGTT
GATTTTGAAAATGTT
sequence update 2002.10.25
Translated Amino Acid sequence 
nffslll*kf*LSKKNEMTILSKVLVATGFLYGIYHVNNLVQEYKDYSLEQGYTLADFGF
EQPTGLARPQKKKSARESNQVQQYTEEVQILSQRSKVFIDKGDYNSALPCLERIVEISQE
YPPFASYGRNAILFIIKFSQEAGDYDLYSKYAKVLIESIDNPDKGELESIAKMVADFANR
LLEADKSLNAIDIIKSSMER---

---LFQVVXXHLDPKYSVSIYKYLAESAKSYXHYEDYYSLVDKLIGVLAKSEADPVNKEN
IVISVKLEKAETLMSTGSTEKAKEIYDQIKQNEYFCFATKSKSKYLSVEHVTSAKGLQSI
CVGQKLNTTLPSADTILVVDFENV
Translated Amino Acid sequence (All Frames) 
Frame A:
nffslll*kf*LSKKNEMTILSKVLVATGFLYGIYHVNNLVQEYKDYSLEQGYTLADFGF
EQPTGLARPQKKKSARESNQVQQYTEEVQILSQRSKVFIDKGDYNSALPCLERIVEISQE
YPPFASYGRNAILFIIKFSQEAGDYDLYSKYAKVLIESIDNPDKGELESIAKMVADFANR
LLEADKSLNAIDIIKSSMER---

---ncfkwxgni*iqniqfxftnilqkvqrvtximktiih*lin*ley*qnqkliqlikr
ilsslln*rklkl*cqlvpqkkqrkytiklnkmnisvlqpnlnqsisllnmlplpkvfnq
fvsvkn*illylqlilf*llilkm

Frame B:
ifflycyrnfn*vkktk*qffqry*wqrdfymvftm*ii*fknikiih*nkdthllildl
nnqqv*lvhkrrnqhvnqikynntlkkfkyfhnvvkyl*ikviiivlfhvwnvllkslkn
ihhlqvmvemqsfl*lnslkklvimiyilnmqkfllnqliiqikvnlkvllkw*lilqid
ywklikv*mlli*lshqwk---

---tvssgxxtfrskifsfxlqiscrkckelrxl*rllfis**inwsiskirs*ss**re
ychlc*ires*nfnvnwfhrkskgnirsn*tk*iflfcnqi*ikvslc*tcylcqrssin
lcrskikyyftfs*yyfsc*f*kc

Frame C:
ffffivieilik*kkrndnsfkgisgngifiwylpck*fssri*rlfirtrihtc*fwi*
ttnrfssstkeeist*ikssttih*rssntftt**siyr*r*l**cssmfgtyc*nlsri
sticklw*kcnpfyn*ilsrsw*l*fif*ickssy*in**sr*r*t*kyc*ngs*fck*i
igs**kfkcy*yn*vingk---

---LFQVVXXHLDPKYSVSIYKYLAESAKSYXHYEDYYSLVDKLIGVLAKSEADPVNKEN
IVISVKLEKAETLMSTGSTEKAKEIYDQIKQNEYFCFATKSKSKYLSVEHVTSAKGLQSI
CVGQKLNTTLPSADTILVVDFENV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHE433 (CHE433Q) /CSM/CH/CHE4-B/CHE433Q.Seq.d/                       1901   0.0
VHA688 (VHA688Q) /CSM/VH/VHA6-D/VHA688Q.Seq.d/                       1120   0.0
VFO782 (VFO782Q) /CSM/VF/VFO7-D/VFO782Q.Seq.d/                       1120   0.0
SFH647 (SFH647Q) /CSM/SF/SFH6-B/SFH647Q.Seq.d/                       1120   0.0
CFJ116 (CFJ116Q) /CSM/CF/CFJ1-A/CFJ116Q.Seq.d/                       1104   0.0
VFI305 (VFI305Q) /CSM/VF/VFI3-A/VFI305Q.Seq.d/                       1088   0.0
AFL783 (AFL783Q) /CSM/AF/AFL7-D/AFL783Q.Seq.d/                       1088   0.0
VFO882 (VFO882Q) /CSM/VF/VFO8-D/VFO882Q.Seq.d/                       1049   0.0
VFA356 (VFA356Q) /CSM/VF/VFA3-C/VFA356Q.Seq.d/                        969   0.0
VFB292 (VFB292Q) /CSM/VF/VFB2-D/VFB292Q.Seq.d/                        872   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017197|AE017197.1 Rickettsia typhi str. Wilmington complete genome.    38   8e-06  25
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    34   7e-05  17
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             34   7e-04  28
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    34   8e-04  16
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          30   0.004  26
AL034558|AL034558.3 Plasmodium falciparum MAL3P2.                  40   0.008  10
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36   0.014  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.014  17
AE017337|AE017337.1 Mycoplasma mobile 163K section 1 of 3 of...    34   0.014  15
CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         36   0.016  23
dna update 2004. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001193_372(CP001193|pid:none) Rhizobium leguminosarum bv. trif...    39   0.28
CP000416_142(CP000416|pid:none) Lactobacillus brevis ATCC 367, c...    38   0.48
CP001013_1954(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    36   1.8
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme...    35   4.0
AF315285_1(AF315285|pid:none) Plasmodium yoelii yoelii p235 rhop...    35   4.0
AF315287_1(AF315287|pid:none) Plasmodium yoelii yoelii p235 rhop...    35   4.0
AF315281_1(AF315281|pid:none) Plasmodium yoelii yoelii p235 rhop...    35   4.0
AJ489164_1(AJ489164|pid:none) Plasmodium yoelii yoelii partial m...    34   6.9
CP000137_24(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p42...    34   6.9
CP001080_329(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    34   9.0
protein update 2009. 3.30
PSORT 

 psg: 0.83  gvh: 0.51  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHE433 is cyt
5' end seq. ID CHE433F
5' end seq. 
>CHE433F.Seq
AATTTTTTTTCTTTATTGTTATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATT
CTTTCAAAGGTATTAGTGGCAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTA
GTTCAAGAATATAAAGATTATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTT
GAACAACCAACAGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAA
GTACAACAATACACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGAT
AAAGGTGATTATAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAA
TATCCACCATTTGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAA
GAAGCTGGTGATTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGAT
AATCCAGATAAAGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGA
TTATTGGAAGCTGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGA
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID CHE433Z
3' end seq. 
>CHE433Z.Seq
NNNNNNNNNNAACTGTTTCAAGTGGTGNGGNAACATTTAGATCCAAAATATTCAGTTTCN
ATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGANCATTATGAAGACTATTATTCA
TTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAATAAAGAG
AATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGTTCCACA
GAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTTGCAACC
AAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTTCAATCA
ATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTAGTTGTT
GATTTTGAAAATGTT
Length of 3' end seq. 435
Connected seq. ID CHE433P
Connected seq. 
>CHE433P.Seq
AATTTTTTTTCTTTATTGTTATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATT
CTTTCAAAGGTATTAGTGGCAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTA
GTTCAAGAATATAAAGATTATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTT
GAACAACCAACAGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAA
GTACAACAATACACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGAT
AAAGGTGATTATAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAA
TATCCACCATTTGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAA
GAAGCTGGTGATTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGAT
AATCCAGATAAAGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGA
TTATTGGAAGCTGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGA
----------AACTGTTTCAAGTGGTGNGGNAACATTTAGATCCAAAATATTCAGTTTCN
ATTTACAAATATCTTGCAGAAAGTGCAAAGAGTTACGANCATTATGAAGACTATTATTCA
TTAGTTGATAAATTAATTGGAGTATTAGCAAAATCAGAAGCTGATCCAGTTAATAAAGAG
AATATTGTCATCTCTGTTAAATTAGAGAAAGCTGAAACTTTAATGTCAACTGGTTCCACA
GAAAAAGCAAAGGAAATATACGATCAAATTAAACAAAATGAATATTTCTGTTTTGCAACC
AAATCTAAATCAAAGTATCTCTCTGTTGAACATGTTACCTCTGCCAAAGGTCTTCAATCA
ATTTGTGTCGGTCAAAAATTAAATACTACTTTACCTTCAGCTGATACTATTTTAGTTGTT
GATTTTGAAAATGTT
Length of connected seq. 1025
Full length Seq ID -
Full length Seq. -
Length of full length seq. -